C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Src homology 2 domain containing F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033256 Shf 10090 - 2:122348892-122369162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048635 Shf-001 122348892-122366828 protein_coding
  ENSMUST00000110530 Shf-007 122349199-122358266 protein_coding
  ENSMUST00000110531 Shf-201 122348893-122368918 protein_coding
  ENSMUST00000110532 Shf-004 122349128-122368832 protein_coding
  ENSMUST00000121237 Shf-008 122349199-122358240 protein_coding
  ENSMUST00000125826 Shf-003 122349128-122369162 protein_coding
  ENSMUST00000135848 Shf-006 122349504-122354131 retained_intron
  ENSMUST00000139819 Shf-005 122349128-122359586 protein_coding
  ENSMUST00000143484 Shf-009 122349388-122357220 protein_coding
  ENSMUST00000151130 Shf-002 122349128-122369137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048635ENSMUST00000110530ENSMUST00000110531ENSMUST00000110532ENSMUST00000121237ENSMUST00000125826ENSMUST00000135848ENSMUST00000139819ENSMUST00000143484ENSMUST00000151130
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048635 0.825±0.24 0.823±0.00 N/A N/A 1.569±0.96 3.361±1.50 0.104±0.00 1.573±0.36 1.554±0.24 0.573±0.08 N/A 2.374±1.10 0.706±0.00 N/A
ENSMUST00000110530 2.068±0.27 N/A N/A N/A 1.814±0.69 N/A 0.244±0.00 1.719±0.69 2.114±0.89 0.627±0.00 N/A 3.499±0.80 3.124±0.00 N/A
ENSMUST00000110531 0.742±0.13 0.966±0.31 1.500±0.12 4.917±1.22 0.569±0.00 1.333±0.18 0.309±0.09 1.081±0.38 1.709±0.47 0.353±0.04 0.320±0.13 1.098±0.00 2.428±0.61 2.533±0.60
ENSMUST00000110532 N/A N/A N/A 12.123±0.00 N/A N/A N/A N/A N/A N/A 0.516±0.41 6.856±5.17 4.620±1.05 2.365±0.00
ENSMUST00000121237 N/A 1.273±0.00 0.995±0.07 N/A 2.363±0.91 3.101±0.24 0.497±0.02 2.227±0.77 1.496±0.49 0.646±0.09 0.285±0.11 2.867±1.06 1.258±0.23 3.067±0.75
ENSMUST00000125826 0.546±0.00 0.905±0.00 0.577±0.00 N/A 0.988±0.38 1.586±0.61 N/A 0.563±0.09 0.475±0.06 0.382±0.00 N/A 1.130±0.14 2.463±1.97 1.072±0.36
ENSMUST00000135848 N/A 3.184±0.69 N/A N/A N/A N/A N/A N/A N/A 1.645±0.00 N/A 6.268±1.93 N/A N/A
ENSMUST00000139819 N/A N/A N/A 12.341±5.19 N/A N/A 0.517±0.16 N/A N/A 0.477±0.00 0.417±0.12 N/A N/A 1.242±0.39
ENSMUST00000143484 N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151130 0.586±0.01 0.714±0.30 0.768±0.00 N/A 1.631±0.28 1.647±0.70 0.165±0.03 1.373±0.00 0.870±0.29 0.300±0.08 0.205±0.07 1.796±0.19 1.083±0.59 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DG CIL_0004DG_0002 CGP 2:122315672-122369162
CIL_0004NE CIL_0004NE_0002 CGP 2:122348892-122461137

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087607 SHF Src homology 2 domain containing F protein_coding Danio_rerio
ENSG00000138606 SHF Src homology 2 domain containing F protein_coding Homo_sapiens

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