C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Src homology 2 domain containing F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560540 SHF-002 ENSG00000138606 9606 - 15:45167214-45187956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryTestisENST00000560540
Transcript ID Adipose Adrenal Breast Colon Liver Ovary Testis
ENST00000560540 2.609±0.00 2.754±0.00 2.162±0.00 7.477±0.00 6.015±0.00 13.082±1.95 9.168±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DG CIL_0004DG_0001 CGP 15:45129933-45201175
CIL_0004NE CIL_0004NE_0001 CGP 15:45167214-45277845

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151130 Shf-002 protein_coding Mus_musculus 0 1766
ENSMUST00000125826 Shf-003 protein_coding Mus_musculus 0 1757
ENSMUST00000110531 Shf-201 protein_coding Mus_musculus 0 1531
ENSMUST00000048635 Shf-001 protein_coding Mus_musculus 0 1249
ENSMUST00000121237 Shf-008 protein_coding Mus_musculus 0 1048
ENSMUST00000110530 Shf-007 protein_coding Mus_musculus 0 1038
ENSMUST00000110532 Shf-004 protein_coding Mus_musculus 0 848
ENSMUST00000139819 Shf-005 protein_coding Mus_musculus 0 817
ENSMUST00000143484 Shf-009 protein_coding Mus_musculus 0 420
ENSMUST00000135848 Shf-006 retained_intron Mus_musculus 0 250

Loading