C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138650 PCDH10 9606 + 4:133149315-133208606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264360 PCDH10-001 133149315-133194700 protein_coding
  ENST00000511112 PCDH10-002 133154893-133208606 retained_intron
  ENST00000618019 PCDH10-003 133149315-133153888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264360ENST00000511112ENST00000618019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264360 0.026±0.00 0.159±0.00 0.284±0.00 6.466±1.77 0.027±0.02 0.138±0.12 0.032±0.02 0.740±0.00 0.268±0.27 0.081±0.01 0.030±0.00 0.227±0.07 1.768±0.39 0.764±0.26
ENST00000511112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.234±0.00
ENST00000618019 0.067±0.00 0.305±0.00 N/A 7.507±0.00 0.016±0.00 0.221±0.00 0.068±0.00 N/A 0.136±0.00 0.446±0.00 0.043±0.00 0.237±0.16 4.395±1.21 0.669±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0001 CGP 4:129093317-133208606
CIL_00001S CIL_00001S_0001 CGP 4:133149315-134201748

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043961 PCDH10 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000061909 protocadherin 10 protein_coding Danio_rerio
ENSMUSG00000049100 Pcdh10 protocadherin 10 protein_coding Mus_musculus

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