C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049100 Pcdh10 10090 + 3:45378398-45434566 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000166126 Pcdh10-201 45378398-45434566 protein_coding
  ENSMUST00000170695 Pcdh10-202 45378398-45423711 protein_coding
  ENSMUST00000171554 Pcdh10-203 45378398-45399594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166126ENSMUST00000170695ENSMUST00000171554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166126 N/A 0.278±0.05 0.011±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.011±0.00 0.022±0.00 0.033±0.00 0.050±0.03
ENSMUST00000170695 0.039±0.00 N/A 0.015±0.00 7.039±2.55 0.013±0.00 N/A N/A 0.035±0.00 0.018±0.01 N/A 0.006±0.00 0.068±0.07 0.111±0.03 0.058±0.02
ENSMUST00000171554 0.141±0.00 1.573±0.29 0.052±0.02 14.445±5.75 0.044±0.02 0.205±0.07 0.013±0.01 0.039±0.03 0.013±0.01 0.020±0.01 0.013±0.00 0.229±0.06 0.081±0.07 0.277±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0002 CGP 3:41742611-45434566
CIL_00001S CIL_00001S_0002 CGP 3:45378398-46447941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043961 PCDH10 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000061909 protocadherin 10 protein_coding Danio_rerio
ENSG00000138650 PCDH10 protocadherin 10 protein_coding Homo_sapiens

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