C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618019 PCDH10-003 ENSG00000138650 9606 + 4:133149315-133153888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000618019
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000618019 0.067±0.00 0.305±0.00 7.507±0.00 0.016±0.00 0.221±0.00 0.068±0.00 0.136±0.00 0.446±0.00 0.043±0.00 0.237±0.16 4.395±1.21 0.669±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0001 CGP 4:129093317-133208606
CIL_00001S CIL_00001S_0001 CGP 4:133149315-134201748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170695 Pcdh10-202 protein_coding Mus_musculus 0 3862
ENSMUST00000166126 Pcdh10-201 protein_coding Mus_musculus 0 3862
ENSMUST00000171554 Pcdh10-203 protein_coding Mus_musculus 0 3862

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