C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00001L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151470-ENSG00000138650 CGP 9606 4:129093317-133208606
GeneTranscriptPositionBiotype
ENSG00000138650 (PCDH10)
protocadherin 10 		ENST00000264360 (PCDH10-001) 133149315-133194700 protein_coding
ENST00000511112 (PCDH10-002) 133154893-133208606 retained_intron
ENST00000618019 (PCDH10-003) 133149315-133153888 protein_coding
ENSG00000151466 (SCLT1)
sodium channel and clathrin linker 1 		ENST00000281142 (SCLT1-001) 128883993-129093607 protein_coding
ENST00000439369 (SCLT1-004) 128884346-129093410 protein_coding
ENST00000502495 (SCLT1-007) 128884390-128997285 processed_transcript
ENST00000503215 (SCLT1-005) 128884346-129093412 protein_coding
ENST00000503401 (SCLT1-002) 129039230-129093563 protein_coding
ENST00000503565 (SCLT1-009) 128864921-128936704 processed_transcript
ENST00000506233 (SCLT1-006) 128883997-128972372 retained_intron
ENST00000506368 (SCLT1-008) 129036595-129093377 protein_coding
ENST00000511426 (SCLT1-003) 129039193-129093545 protein_coding
ENSG00000184139 (RPL7AP28)
ribosomal protein L7a pseudogene 28 		ENST00000464513 (RPL7AP28-001) 131857343-131857913 processed_pseudogene
ENSG00000234125 (EEF1GP8)
eukaryotic translation elongation factor 1 gamma pseudogene 8 		ENST00000506566 (EEF1GP8-001) 129903010-129904163 processed_pseudogene
ENSG00000241392 (RN7SL205P)
RNA, 7SL, cytoplasmic 205, pseudogene 		ENST00000490174 (RN7SL205P-201) 131720260-131720543 misc_RNA
ENSG00000246876 (RP11-519M16.1)
 ENST00000500092 (RP11-519M16.1-001) 129724171-129771478 lincRNA
ENST00000509105 (RP11-519M16.1-002) 129748117-129771481 lincRNA
ENSG00000248735 (R3HDM2P1)
R3H domain containing 2 pseudogene 1 		ENST00000505381 (R3HDM2P1-001) 133124104-133126063 processed_pseudogene
ENSG00000248958 (ZSWIM5P3)
zinc finger, SWIM-type containing 5 pseudogene 3 		ENST00000511265 (ZSWIM5P3-001) 129135926-129139740 processed_pseudogene
ENSG00000249416 (RP11-614F17.1)
 ENST00000512403 (RP11-614F17.1-001) 131768233-131768578 processed_pseudogene
ENSG00000249463 (RP11-1E22.1)
 ENST00000510967 (RP11-1E22.1-001) 132027175-132028434 lincRNA
ENSG00000249513 (RP11-404I7.1)
 ENST00000511916 (RP11-404I7.1-001) 132985510-132988677 lincRNA
ENSG00000249618 (RP11-422J15.1)
 ENST00000507099 (RP11-422J15.1-004) 129837361-129928716 lincRNA
ENST00000508724 (RP11-422J15.1-002) 129771664-129791660 lincRNA
ENST00000513875 (RP11-422J15.1-001) 129771659-129955368 lincRNA
ENST00000514892 (RP11-422J15.1-003) 129788959-129798649 lincRNA
ENSG00000250102 (RP11-314N14.1)
 ENST00000500169 (RP11-314N14.1-001) 131380013-131528121 lincRNA
ENST00000505436 (RP11-314N14.1-002) 131485957-131541397 lincRNA
ENSG00000250193 (RP11-419L4.1)
 ENST00000503542 (RP11-419L4.1-001) 129299175-129305022 lincRNA
ENSG00000250241 (RP11-9G1.3)
 ENST00000505289 (RP11-9G1.3-001) 133093860-133149113 lincRNA
ENST00000506897 (RP11-9G1.3-002) 133075311-133096826 lincRNA
ENST00000509715 (RP11-9G1.3-003) 133140581-133149116 lincRNA
ENSG00000251051 (ELL2P2)
elongation factor, RNA polymerase II, 2 pseudogene 2 		ENST00000515135 (ELL2P2-001) 132367786-132368479 processed_pseudogene
ENSG00000251326 (RP11-521E5.1)
 ENST00000508942 (RP11-521E5.1-001) 130376229-130386371 lincRNA
ENSG00000251398 (LINC01256)
long intergenic non-protein coding RNA 1256 		ENST00000513270 (LINC01256-001) 132591089-132678503 lincRNA
ENSG00000251488 (RP11-404I7.2)
 ENST00000509628 (RP11-404I7.2-001) 132836772-132981677 lincRNA
ENSG00000251555 (RP11-745L13.2)
 ENST00000510592 (RP11-745L13.2-001) 131930031-131975952 lincRNA
ENSG00000251598 (RP11-789C2.1)
 ENST00000420721 (RP11-789C2.1-001) 132004810-132124031 lincRNA
ENSG00000251676 (RP11-614F17.2)
 ENST00000507332 (RP11-614F17.2-001) 131773565-131791482 lincRNA
ENST00000507933 (RP11-614F17.2-003) 131773302-131774692 lincRNA
ENST00000514222 (RP11-614F17.2-002) 131773547-131775036 lincRNA
ENSG00000252014 (SNORA70)
Small nucleolar RNA SNORA70 		ENST00000516205 (SNORA70.1-217) 131768140-131768249 snoRNA
ENSG00000280059 (RP11-401I19.2)
 ENST00000624393 (RP11-401I19.2-001) 130808507-130811933 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00001L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025766-ENSMUSG00000049100 CGP 10090 3:41742611-45434566
GeneTranscriptPositionBiotype
ENSMUSG00000049100 (Pcdh10)
protocadherin 10 		ENSMUST00000166126 (Pcdh10-201) 45378398-45434566 protein_coding
ENSMUST00000170695 (Pcdh10-202) 45378398-45423711 protein_coding
ENSMUST00000171554 (Pcdh10-203) 45378398-45399594 protein_coding
ENSMUSG00000097040 (2610316D01Rik)
RIKEN cDNA 2610316D01 gene 		ENSMUST00000181047 (2610316D01Rik-201) 45280440-45378260 lincRNA

Mus musculus Ensembl (GRCm38)

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Exciting message
Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001L_0001ENSG00000138650ENST00000264360ENST00000511112ENST00000618019ENSG00000151466ENST00000281142ENST00000439369ENST00000502495ENST00000503215ENST00000503401ENST00000503565ENST00000506233ENST00000506368ENST00000511426ENSG00000184139ENST00000464513ENSG00000234125ENST00000506566ENSG00000241392ENST00000490174ENSG00000246876ENST00000500092ENST00000509105ENSG00000248735ENST00000505381ENSG00000248958ENST00000511265ENSG00000249416ENST00000512403ENSG00000249463ENST00000510967ENSG00000249513ENST00000511916ENSG00000249618ENST00000507099ENST00000508724ENST00000513875ENST00000514892ENSG00000250102ENST00000500169ENST00000505436ENSG00000250193ENST00000503542ENSG00000250241ENST00000505289ENST00000506897ENST00000509715ENSG00000251051ENST00000515135ENSG00000251326ENST00000508942ENSG00000251398ENST00000513270ENSG00000251488ENST00000509628ENSG00000251555ENST00000510592ENSG00000251598ENST00000420721ENSG00000251676ENST00000507332ENST00000507933ENST00000514222ENSG00000252014ENST00000516205ENSG00000280059ENST00000624393CIL_00001L_0002ENSMUSG00000049100ENSMUST00000166126ENSMUST00000170695ENSMUST00000171554ENSMUSG00000097040ENSMUST00000181047
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001L_0001ENSG00000138650ENST00000264360ENST00000511112ENST00000618019ENSG00000151466ENST00000281142ENST00000503215ENSG00000184139ENST00000464513ENSG00000234125ENST00000506566ENSG00000241392ENST00000490174ENSG00000246876ENST00000500092ENSG00000248735ENST00000505381ENSG00000248958ENST00000511265ENSG00000249416ENST00000512403ENSG00000249463ENST00000510967ENSG00000249513ENST00000511916ENSG00000249618ENST00000507099ENST00000508724ENST00000513875ENSG00000250102ENST00000500169ENSG00000250193ENST00000503542ENSG00000250241ENST00000505289ENST00000506897ENST00000509715ENSG00000251051ENST00000515135ENSG00000251326ENST00000508942ENSG00000251398ENST00000513270ENSG00000251488ENST00000509628ENSG00000251555ENST00000510592ENSG00000251598ENST00000420721ENSG00000251676ENST00000507332ENST00000507933ENST00000514222ENSG00000252014ENST00000516205ENSG00000280059ENST00000624393CIL_00001L_0002ENSMUSG00000049100ENSMUST00000166126ENSMUST00000170695ENSMUST00000171554ENSMUSG00000097040ENSMUST00000181047
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138650 ENST00000264360 0.026±0.00 0.159±0.00 0.284±0.00 6.466±1.77 0.027±0.02 0.138±0.12 0.032±0.02 0.740±0.00 0.268±0.27 0.081±0.01 0.030±0.00 0.227±0.07 1.768±0.39 0.764±0.26
ENST00000511112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.234±0.00
ENST00000618019 0.067±0.00 0.305±0.00 N/A 7.507±0.00 0.016±0.00 0.221±0.00 0.068±0.00 N/A 0.136±0.00 0.446±0.00 0.043±0.00 0.237±0.16 4.395±1.21 0.669±0.35
ENSG00000151466 ENST00000281142 N/A N/A N/A N/A 2.005±0.00 2.188±0.00 N/A N/A 2.670±0.00 2.887±0.00 N/A 2.578±0.51 2.627±0.00 3.856±0.00
ENST00000439369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503215 N/A N/A N/A N/A 4.773±0.00 N/A 1.197±0.00 N/A N/A N/A 1.032±0.00 N/A N/A N/A
ENST00000503401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184139 ENST00000464513 0.027±0.00 0.230±0.00 N/A 0.309±0.00 0.030±0.00 0.234±0.07 0.184±0.11 0.522±0.00 0.180±0.13 1.411±0.00 N/A 0.260±0.13 0.711±0.11 5.073±1.56
ENSG00000234125 ENST00000506566 0.043±0.00 0.060±0.00 N/A N/A 0.047±0.00 0.029±0.00 0.056±0.00 0.015±0.00 0.014±0.00 0.131±0.00 0.091±0.00 0.032±0.00 N/A 0.096±0.05
ENSG00000241392 ENST00000490174 N/A N/A N/A N/A 0.052±0.00 N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000246876 ENST00000500092 0.005±0.00 0.005±0.00 N/A N/A N/A N/A 0.015±0.00 0.032±0.00 N/A N/A 0.048±0.00 N/A N/A 0.818±0.41
ENST00000509105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248735 ENST00000505381 N/A N/A N/A 0.182±0.00 N/A N/A 0.098±0.00 N/A N/A 0.053±0.00 N/A N/A N/A 0.049±0.00
ENSG00000248958 ENST00000511265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A
ENSG00000249416 ENST00000512403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.859±0.00 N/A 0.484±0.00
ENSG00000249463 ENST00000510967 N/A 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.233±0.06 0.384±0.14
ENSG00000249513 ENST00000511916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.11
ENSG00000249618 ENST00000507099 N/A 0.030±0.00 N/A N/A N/A N/A 0.026±0.00 0.030±0.00 0.050±0.00 N/A N/A N/A N/A 0.415±0.00
ENST00000508724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.933±0.00
ENST00000513875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.02
ENST00000514892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250102 ENST00000500169 N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A 0.155±0.00 0.124±0.00 1.365±0.61
ENST00000505436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250193 ENST00000503542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00
ENSG00000250241 ENST00000505289 0.020±0.00 0.072±0.00 N/A 1.035±0.63 0.014±0.00 0.046±0.00 0.015±0.00 0.024±0.01 0.070±0.00 N/A 0.019±0.00 0.022±0.01 0.052±0.03 0.064±0.00
ENST00000506897 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.040±0.00 0.098±0.00 0.160±0.00
ENST00000509715 N/A N/A 0.794±0.00 3.975±0.00 N/A N/A N/A N/A 0.510±0.00 N/A N/A 0.024±0.00 N/A N/A
ENSG00000251051 ENST00000515135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00
ENSG00000251326 ENST00000508942 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.172±0.14
ENSG00000251398 ENST00000513270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.216±0.02
ENSG00000251488 ENST00000509628 N/A N/A N/A 0.129±0.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251555 ENST00000510592 0.080±0.00 1.043±0.00 N/A 1.044±0.49 0.418±0.39 0.791±0.58 0.353±0.09 1.286±0.00 0.496±0.38 0.950±0.84 0.156±0.00 1.227±0.71 0.136±0.00 1.228±0.84
ENSG00000251598 ENST00000420721 0.083±0.00 0.057±0.00 N/A N/A N/A N/A 0.104±0.00 0.029±0.00 N/A N/A N/A 0.079±0.00 0.166±0.07 0.224±0.00
ENSG00000251676 ENST00000507332 N/A N/A N/A 0.456±0.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.994±0.00
ENST00000507933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.486±0.00
ENST00000514222 N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A 0.041±0.00 0.052±0.02 1.738±0.80
ENSG00000252014 ENST00000516205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.809±0.00 N/A
ENSG00000280059 ENST00000624393 N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A 0.035±0.00 N/A 0.021±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000049100 ENSMUST00000166126 N/A 0.278±0.05 0.011±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.011±0.00 0.022±0.00 0.033±0.00 0.050±0.03
ENSMUST00000170695 0.039±0.00 N/A 0.015±0.00 7.039±2.55 0.013±0.00 N/A N/A 0.035±0.00 0.018±0.01 N/A 0.006±0.00 0.068±0.07 0.111±0.03 0.058±0.02
ENSMUST00000171554 0.141±0.00 1.573±0.29 0.052±0.02 14.445±5.75 0.044±0.02 0.205±0.07 0.013±0.01 0.039±0.03 0.013±0.01 0.020±0.01 0.013±0.00 0.229±0.06 0.081±0.07 0.277±0.15
ENSMUSG00000097040 ENSMUST00000181047 0.118±0.06 N/A 0.063±0.00 7.768±2.30 0.061±0.02 N/A N/A N/A 0.064±0.05 0.146±0.00 N/A 0.243±0.11 0.061±0.00 N/A

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