C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138668 HNRNPD 9606 - 4:82352498-82374503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313899 HNRNPD-001 82352498-82373956 protein_coding
  ENST00000352301 HNRNPD-003 82353834-82373983 protein_coding
  ENST00000353341 HNRNPD-002 82353829-82373986 protein_coding
  ENST00000503822 HNRNPD-007 82358758-82374161 protein_coding
  ENST00000507010 HNRNPD-008 82357403-82374144 protein_coding
  ENST00000508119 HNRNPD-012 82354847-82357392 processed_transcript
  ENST00000509107 HNRNPD-009 82359516-82373985 protein_coding
  ENST00000509263 HNRNPD-011 82356554-82373150 protein_coding
  ENST00000513584 HNRNPD-004 82355249-82373991 nonsense_mediated_decay
  ENST00000514325 HNRNPD-006 82353829-82358842 retained_intron
  ENST00000514671 HNRNPD-005 82353834-82359639 nonsense_mediated_decay
  ENST00000515432 HNRNPD-010 82357437-82374503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313899ENST00000352301ENST00000353341ENST00000509107ENST00000509263ENST00000513584ENST00000514325ENST00000514671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313899 N/A N/A N/A 8.154±0.00 N/A N/A N/A N/A N/A 1.672±0.00 3.481±0.00 5.502±3.88 N/A N/A
ENST00000352301 71.173±0.00 62.535±0.00 N/A 37.346±0.00 34.028±0.00 47.447±0.00 9.764±8.96 17.106±0.00 13.182±0.00 37.200±0.00 8.978±7.19 68.337±21.21 44.154±4.58 59.885±0.00
ENST00000353341 95.507±0.00 96.553±0.00 4.503±0.00 28.696±26.66 38.794±32.30 40.003±33.47 14.828±13.55 28.267±24.40 13.742±9.75 25.221±0.00 17.864±0.00 92.207±59.10 79.219±19.28 74.647±8.22
ENST00000509107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 189.281±0.00 N/A
ENST00000509263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 168.053±0.00 148.153±0.00 89.687±0.00
ENST00000513584 N/A N/A N/A N/A N/A N/A N/A 21.177±0.00 N/A N/A N/A N/A N/A N/A
ENST00000514325 N/A N/A N/A N/A 2.376±0.00 2.960±0.00 N/A N/A N/A N/A N/A 1.444±0.00 N/A N/A
ENST00000514671 N/A N/A N/A 2.109±0.00 N/A N/A 1.278±0.00 4.429±0.00 9.345±0.00 19.377±0.00 5.991±4.13 6.075±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006401 TAS RNA catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030529 IDA ribonucleoprotein complex
GO:0042162 IDA telomeric DNA binding
GO:0042752 IMP regulation of circadian rhythm
GO:0043488 IEA regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0070062 IDA extracellular vesicular exosome
GO:0097167 IMP circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059246 hnrnpd heterogeneous nuclear ribonucleoprotein D protein_coding Danio_rerio
ENSMUSG00000000568 Hnrnpd heterogeneous nuclear ribonucleoprotein D protein_coding Mus_musculus

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