C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514671 HNRNPD-005 ENSG00000138668 9606 - 4:82353834-82359639 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverLungMuscleOvaryENST00000514671
Transcript ID Brain Heart Kidney Liver Lung Muscle Ovary
ENST00000514671 2.109±0.00 1.278±0.00 4.429±0.00 9.345±0.00 19.377±0.00 5.991±4.13 6.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171106 Hnrnpd-006 nonsense_mediated_decay Mus_musculus 0 1801
ENSMUST00000072750 Hnrnpd-005 protein_coding Mus_musculus 0 1077
ENSMUST00000019128 Hnrnpd-002 protein_coding Mus_musculus 0 1077
ENSMUST00000112939 Hnrnpd-003 protein_coding Mus_musculus 0 915
ENSMUST00000172361 Hnrnpd-001 protein_coding Mus_musculus 0 915
ENSMUST00000171640 Hnrnpd-010 nonsense_mediated_decay Mus_musculus 0 894
ENSMUST00000164833 Hnrnpd-012 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000168396 Hnrnpd-004 nonsense_mediated_decay Mus_musculus 0 616
ENSMUST00000171786 Hnrnpd-007 protein_coding Mus_musculus 0 547
ENSMUST00000170654 Hnrnpd-009 retained_intron Mus_musculus 0 351
ENSMUST00000119259 Gm15207-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000167035 Hnrnpd-011 protein_coding Mus_musculus 2e-39 167
ENSMUST00000170912 Hnrnpd-008 processed_transcript Mus_musculus 4e-32 143

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