C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509263 HNRNPD-011 ENSG00000138668 9606 - 4:82356554-82373150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000509263
Transcript ID Ovary Placenta Testis
ENST00000509263 168.053±0.00 148.153±0.00 89.687±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172361 Hnrnpd-001 protein_coding Mus_musculus 0 1245
ENSMUST00000112939 Hnrnpd-003 protein_coding Mus_musculus 0 1153
ENSMUST00000019128 Hnrnpd-002 protein_coding Mus_musculus 0 1013
ENSMUST00000171106 Hnrnpd-006 nonsense_mediated_decay Mus_musculus 0 948
ENSMUST00000072750 Hnrnpd-005 protein_coding Mus_musculus 0 920
ENSMUST00000168396 Hnrnpd-004 nonsense_mediated_decay Mus_musculus 0 848
ENSMUST00000171786 Hnrnpd-007 protein_coding Mus_musculus 0 645
ENSMUST00000171640 Hnrnpd-010 nonsense_mediated_decay Mus_musculus 0 597
ENSMUST00000164833 Hnrnpd-012 nonsense_mediated_decay Mus_musculus 0 508
ENSMUST00000170654 Hnrnpd-009 retained_intron Mus_musculus 0 351
ENSMUST00000119259 Gm15207-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000167035 Hnrnpd-011 protein_coding Mus_musculus 0 265
ENSMUST00000170912 Hnrnpd-008 processed_transcript Mus_musculus 0 241

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