C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313899 HNRNPD-001 ENSG00000138668 9606 - 4:82352498-82373956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungMuscleOvaryENST00000313899
Transcript ID Brain Lung Muscle Ovary
ENST00000313899 8.154±0.00 1.672±0.00 3.481±0.00 5.502±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052R CIL_00052R_0002 CGP 4:82352498-82430225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006401 TAS RNA catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030529 IDA ribonucleoprotein complex
GO:0042162 IDA telomeric DNA binding
GO:0042752 IMP regulation of circadian rhythm
GO:0043488 IEA regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0070062 IDA extracellular vesicular exosome
GO:0097167 IMP circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172361 Hnrnpd-001 protein_coding Mus_musculus 0 2712
ENSMUST00000112939 Hnrnpd-003 protein_coding Mus_musculus 0 1892
ENSMUST00000019128 Hnrnpd-002 protein_coding Mus_musculus 0 1570
ENSMUST00000168396 Hnrnpd-004 nonsense_mediated_decay Mus_musculus 0 1048
ENSMUST00000171106 Hnrnpd-006 nonsense_mediated_decay Mus_musculus 0 948
ENSMUST00000072750 Hnrnpd-005 protein_coding Mus_musculus 0 920
ENSMUST00000171786 Hnrnpd-007 protein_coding Mus_musculus 0 745
ENSMUST00000164833 Hnrnpd-012 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000171640 Hnrnpd-010 nonsense_mediated_decay Mus_musculus 0 597
ENSMUST00000167035 Hnrnpd-011 protein_coding Mus_musculus 0 464
ENSMUST00000119259 Gm15207-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000170654 Hnrnpd-009 retained_intron Mus_musculus 0 351
ENSMUST00000170912 Hnrnpd-008 processed_transcript Mus_musculus 0 318

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