C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000568 Hnrnpd 10090 - 5:99958426-99978938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019128 Hnrnpd-002 99960598-99978937 protein_coding
  ENSMUST00000072750 Hnrnpd-005 99961002-99978935 protein_coding
  ENSMUST00000112939 Hnrnpd-003 99960998-99978917 protein_coding
  ENSMUST00000164833 Hnrnpd-012 99961168-99964750 nonsense_mediated_decay
  ENSMUST00000167035 Hnrnpd-011 99962301-99964007 protein_coding
  ENSMUST00000168396 Hnrnpd-004 99962283-99978624 nonsense_mediated_decay
  ENSMUST00000170654 Hnrnpd-009 99964743-99966387 retained_intron
  ENSMUST00000170912 Hnrnpd-008 99967308-99978859 processed_transcript
  ENSMUST00000171106 Hnrnpd-006 99961003-99976551 nonsense_mediated_decay
  ENSMUST00000171640 Hnrnpd-010 99961151-99966174 nonsense_mediated_decay
  ENSMUST00000171786 Hnrnpd-007 99966027-99978934 protein_coding
  ENSMUST00000172361 Hnrnpd-001 99958426-99978938 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019128ENSMUST00000072750ENSMUST00000112939ENSMUST00000164833ENSMUST00000170912ENSMUST00000171106ENSMUST00000171640ENSMUST00000171786ENSMUST00000172361
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019128 N/A N/A 25.860±2.90 N/A N/A N/A 2.075±0.14 16.295±4.92 N/A N/A N/A 12.353±1.02 2.422±0.00
ENSMUST00000072750 N/A N/A N/A N/A N/A N/A N/A 40.937±26.84 N/A 4.326±0.72 N/A 22.012±2.77 N/A
ENSMUST00000112939 1.539±0.00 23.331±1.09 33.273±12.22 3.771±1.68 N/A 3.226±0.51 3.642±0.35 29.340±7.69 5.591±0.00 4.868±0.70 28.566±11.86 38.914±24.92 9.429±5.75
ENSMUST00000164833 N/A N/A N/A N/A N/A N/A 5.385±0.00 3.807±0.00 N/A N/A 29.869±0.00 54.158±0.00 34.892±28.41
ENSMUST00000170912 N/A N/A N/A 9.302±0.67 14.938±2.71 N/A 9.926±0.00 N/A 12.245±0.00 N/A 20.508±4.80 N/A N/A
ENSMUST00000171106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.909±0.62 N/A N/A
ENSMUST00000171640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.083±1.78 55.446±21.33 21.181±0.00
ENSMUST00000171786 N/A N/A 182.107±0.00 N/A N/A N/A N/A N/A N/A 17.433±3.21 145.699±60.39 281.415±248.06 93.486±0.00
ENSMUST00000172361 N/A N/A 5.950±0.00 N/A N/A N/A N/A N/A 2.645±0.10 1.851±0.04 N/A N/A 1.227±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019013 IEA viral nucleocapsid
GO:0030529 ISS ribonucleoprotein complex
GO:0042162 ISS telomeric DNA binding
GO:0042752 ISS regulation of circadian rhythm
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation
GO:0070062 IEA extracellular vesicular exosome
GO:0097167 ISS circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059246 hnrnpd heterogeneous nuclear ribonucleoprotein D protein_coding Danio_rerio
ENSG00000138668 HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) protein_coding Homo_sapiens

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