C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier organic anion transporter family, member 1C1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139155 SLCO1C1 9606 + 12:20695355-20753386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266509 SLCO1C1-001 20695465-20753386 protein_coding
  ENST00000497911 SLCO1C1-009 20695561-20700239 retained_intron
  ENST00000534996 SLCO1C1-006 20695355-20696975 processed_transcript
  ENST00000535609 SLCO1C1-007 20695571-20697496 processed_transcript
  ENST00000539415 SLCO1C1-003 20695431-20752696 nonsense_mediated_decay
  ENST00000539443 SLCO1C1-008 20695750-20696943 processed_transcript
  ENST00000540354 SLCO1C1-002 20695462-20752817 protein_coding
  ENST00000545102 SLCO1C1-004 20695597-20753214 protein_coding
  ENST00000545604 SLCO1C1-010 20695480-20752613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000266509ENST00000497911ENST00000534996ENST00000535609ENST00000539415ENST00000539443ENST00000540354ENST00000545102ENST00000545604
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000266509 N/A N/A 4.140±0.00 N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A
ENST00000497911 N/A N/A N/A 0.630±0.00 0.430±0.00 0.120±0.00 N/A 0.243±0.00 0.301±0.00 0.173±0.00 0.043±0.00 N/A
ENST00000534996 N/A N/A N/A N/A 0.113±0.00 0.211±0.00 0.027±0.00 0.276±0.00 N/A N/A 0.099±0.01 N/A
ENST00000535609 0.043±0.00 0.217±0.00 N/A 0.318±0.04 0.229±0.00 0.331±0.00 N/A N/A N/A 0.074±0.00 N/A N/A
ENST00000539415 0.091±0.00 0.126±0.00 N/A N/A N/A N/A N/A 0.024±0.02 0.302±0.00 N/A 0.029±0.00 0.249±0.00
ENST00000539443 N/A N/A N/A 5.956±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540354 N/A N/A 1.638±0.00 0.170±0.00 0.013±0.00 N/A N/A N/A 0.143±0.00 0.061±0.00 N/A 0.085±0.00
ENST00000545102 N/A N/A 0.826±0.00 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A
ENST00000545604 N/A N/A 1.094±0.09 0.167±0.02 0.035±0.00 0.069±0.03 N/A N/A N/A 0.056±0.00 N/A 0.222±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0001 VISTA 12:20114532-20715290
CIL_0005FM CIL_0005FM_0001 CGP 12:20369245-20753386
CIL_0005PX CIL_0005PX_0001 CGP 12:20695355-20916911

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0043252 TAS sodium-independent organic anion transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016749 slco1c1 solute carrier organic anion transporter family, member 1C1 protein_coding Danio_rerio
ENSMUSG00000030235 Slco1c1 solute carrier organic anion transporter family, member 1c1 protein_coding Mus_musculus

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