C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172572-ENSG00000139155 CGP 9606 12:20369245-20753386
GeneTranscriptPositionBiotype
ENSG00000131982 (UBE2L2)
ubiquitin-conjugating enzyme E2L 2 (pseudogene) 		ENST00000254302 (UBE2L2-001) 20449655-20450083 processed_pseudogene
ENSG00000139155 (SLCO1C1)
solute carrier organic anion transporter family, member 1C1 		ENST00000266509 (SLCO1C1-001) 20695465-20753386 protein_coding
ENST00000497911 (SLCO1C1-009) 20695561-20700239 retained_intron
ENST00000534996 (SLCO1C1-006) 20695355-20696975 processed_transcript
ENST00000535609 (SLCO1C1-007) 20695571-20697496 processed_transcript
ENST00000539415 (SLCO1C1-003) 20695431-20752696 nonsense_mediated_decay
ENST00000539443 (SLCO1C1-008) 20695750-20696943 processed_transcript
ENST00000540354 (SLCO1C1-002) 20695462-20752817 protein_coding
ENST00000545102 (SLCO1C1-004) 20695597-20753214 protein_coding
ENST00000545604 (SLCO1C1-010) 20695480-20752613 protein_coding
ENSG00000172572 (PDE3A)
phosphodiesterase 3A, cGMP-inhibited 		ENST00000359062 (PDE3A-001) 20369245-20684381 protein_coding
ENST00000542675 (PDE3A-003) 20370125-20557224 retained_intron
ENST00000544307 (PDE3A-002) 20571864-20680517 processed_transcript
ENSG00000256663 (RP11-424C20.2)
 ENST00000540175 (RP11-424C20.2-001) 20551590-20553012 processed_pseudogene
CIL_0005FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041741-ENSMUSG00000030235 CGP 10090 6:141249269-141570177
GeneTranscriptPositionBiotype
ENSMUSG00000030235 (Slco1c1)
solute carrier organic anion transporter family, member 1c1 		ENSMUST00000032362 (Slco1c1-001) 141524386-141570177 protein_coding
ENSMUST00000135562 (Slco1c1-002) 141524386-141569720 nonsense_mediated_decay
ENSMUSG00000041741 (Pde3a)
phosphodiesterase 3A, cGMP inhibited 		ENSMUST00000043259 (Pde3a-001) 141249269-141505940 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FM_0001ENSG00000131982ENST00000254302ENSG00000139155ENST00000266509ENST00000497911ENST00000534996ENST00000535609ENST00000539415ENST00000539443ENST00000540354ENST00000545102ENST00000545604ENSG00000172572ENST00000359062ENST00000542675ENST00000544307ENSG00000256663ENST00000540175CIL_0005FM_0002ENSMUSG00000030235ENSMUST00000032362ENSMUST00000135562ENSMUSG00000041741ENSMUST00000043259
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FM_0001ENSG00000131982ENST00000254302ENSG00000139155ENST00000266509ENST00000497911ENST00000534996ENST00000535609ENST00000539415ENST00000539443ENST00000540354ENST00000545102ENST00000545604ENSG00000172572ENST00000359062ENST00000544307ENSG00000256663ENST00000540175CIL_0005FM_0002ENSMUSG00000030235ENSMUST00000032362ENSMUST00000135562ENSMUSG00000041741ENSMUST00000043259
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131982 ENST00000254302 0.032±0.00 N/A 4.063±0.00 N/A 3.662±3.50 3.785±0.00 4.966±4.61 0.214±0.12 N/A 3.163±0.00 N/A 0.908±0.00 N/A N/A
ENSG00000139155 ENST00000266509 N/A N/A N/A 4.140±0.00 N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A
ENST00000497911 N/A N/A N/A N/A 0.630±0.00 0.430±0.00 0.120±0.00 N/A 0.243±0.00 0.301±0.00 N/A 0.173±0.00 0.043±0.00 N/A
ENST00000534996 N/A N/A N/A N/A N/A 0.113±0.00 0.211±0.00 0.027±0.00 0.276±0.00 N/A N/A N/A 0.099±0.01 N/A
ENST00000535609 0.043±0.00 0.217±0.00 N/A N/A 0.318±0.04 0.229±0.00 0.331±0.00 N/A N/A N/A N/A 0.074±0.00 N/A N/A
ENST00000539415 0.091±0.00 0.126±0.00 N/A N/A N/A N/A N/A N/A 0.024±0.02 0.302±0.00 N/A N/A 0.029±0.00 0.249±0.00
ENST00000539443 N/A N/A N/A N/A 5.956±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540354 N/A N/A N/A 1.638±0.00 0.170±0.00 0.013±0.00 N/A N/A N/A 0.143±0.00 N/A 0.061±0.00 N/A 0.085±0.00
ENST00000545102 N/A N/A N/A 0.826±0.00 N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A
ENST00000545604 N/A N/A N/A 1.094±0.09 0.167±0.02 0.035±0.00 0.069±0.03 N/A N/A N/A N/A 0.056±0.00 N/A 0.222±0.00
ENSG00000172572 ENST00000359062 2.673±0.00 3.911±0.00 1.604±0.00 0.597±0.00 1.774±0.05 5.817±1.76 24.872±5.58 1.061±0.64 1.449±1.14 4.264±0.00 0.721±0.00 0.731±0.53 3.734±0.90 0.791±0.54
ENST00000542675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544307 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A 0.407±0.00 N/A N/A N/A
ENSG00000256663 ENST00000540175 N/A N/A N/A 0.054±0.00 0.039±0.01 N/A 0.020±0.00 N/A N/A 0.119±0.00 N/A 0.118±0.06 0.073±0.00 0.064±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030235 ENSMUST00000032362 N/A N/A 0.018±0.00 1.095±0.46 N/A N/A 0.037±0.00 N/A N/A N/A 0.039±0.01 N/A 0.013±0.01 N/A
ENSMUST00000135562 0.027±0.02 0.077±0.05 0.020±0.02 2.676±1.73 0.093±0.06 0.078±0.00 0.074±0.03 0.039±0.02 0.016±0.01 0.088±0.05 0.022±0.00 0.068±0.03 0.028±0.00 0.014±0.00
ENSMUSG00000041741 ENSMUST00000043259 2.903±1.49 1.859±0.58 2.106±0.51 0.434±0.16 1.192±0.42 5.863±2.32 5.165±0.57 1.534±0.20 0.314±0.14 8.249±1.43 0.263±0.10 2.308±1.03 0.960±0.45 0.078±0.03

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