C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier organic anion transporter family, member 1c1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030235 Slco1c1 10090 + 6:141524386-141570177 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032362 Slco1c1-001 141524386-141570177 protein_coding
  ENSMUST00000135562 Slco1c1-002 141524386-141569720 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032362ENSMUST00000135562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032362 N/A N/A 0.018±0.00 1.095±0.46 N/A N/A 0.037±0.00 N/A N/A N/A 0.039±0.01 N/A 0.013±0.01 N/A
ENSMUST00000135562 0.027±0.02 0.077±0.05 0.020±0.02 2.676±1.73 0.093±0.06 0.078±0.00 0.074±0.03 0.039±0.02 0.016±0.01 0.088±0.05 0.022±0.00 0.068±0.03 0.028±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0002 VISTA 6:140994807-141595982
CIL_0005FM CIL_0005FM_0002 CGP 6:141249269-141570177
CIL_0005PX CIL_0005PX_0002 CGP 6:141524386-141686646

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016749 slco1c1 solute carrier organic anion transporter family, member 1C1 protein_coding Danio_rerio
ENSG00000139155 SLCO1C1 solute carrier organic anion transporter family, member 1C1 protein_coding Homo_sapiens

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