C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540354 SLCO1C1-002 ENSG00000139155 9606 + 12:20695462-20752817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryTestisENST00000540354
Transcript ID Brain Breast Colon Lung Ovary Testis
ENST00000540354 1.638±0.00 0.170±0.00 0.013±0.00 0.143±0.00 0.061±0.00 0.085±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0001 VISTA 12:20114532-20715290
CIL_0005FM CIL_0005FM_0001 CGP 12:20369245-20753386
CIL_0005PX CIL_0005PX_0001 CGP 12:20695355-20916911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043252 TAS sodium-independent organic anion transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032362 Slco1c1-001 protein_coding Mus_musculus 0 1448
ENSMUST00000135562 Slco1c1-002 nonsense_mediated_decay Mus_musculus 0 723

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