C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539415 SLCO1C1-003 ENSG00000139155 9606 + 12:20695431-20752696 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalLiverLungPlacentaTestisENST00000539415
Transcript ID Adipose Adrenal Liver Lung Placenta Testis
ENST00000539415 0.091±0.00 0.126±0.00 0.024±0.02 0.302±0.00 0.029±0.00 0.249±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0001 VISTA 12:20114532-20715290
CIL_0005FM CIL_0005FM_0001 CGP 12:20369245-20753386
CIL_0005PX CIL_0005PX_0001 CGP 12:20695355-20916911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032362 Slco1c1-001 protein_coding Mus_musculus 0 1528
ENSMUST00000135562 Slco1c1-002 nonsense_mediated_decay Mus_musculus 0 920

Loading