C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478238 SYCP3-005 ENSG00000139351 9606 - 12:101728648-101731666 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyOvaryTestisENST00000478238
Transcript ID Adrenal Brain Breast Colon Kidney Ovary Testis
ENST00000478238 6.710±0.00 4.773±0.00 6.116±0.00 8.912±0.00 10.966±0.00 4.267±0.00 19.910±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125612 Sycp3-003 protein_coding Mus_musculus 0 523
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 0 361
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 0 361
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 0 268
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 0 198
ENSMUST00000123244 Sycp3-002 nonsense_mediated_decay Mus_musculus 2.00386e-43 180
ENSMUST00000020252 Sycp3-001 protein_coding Mus_musculus 2.00386e-43 180

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