C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392927 SYCP3-001 ENSG00000139351 9606 - 12:101728650-101739469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000392927
Transcript ID Testis
ENST00000392927 20.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0007141 NAS male meiosis I
GO:0035093 IMP spermatogenesis, exchange of chromosomal proteins

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020252 Sycp3-001 protein_coding Mus_musculus 0 789
ENSMUST00000123244 Sycp3-002 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 2.99878e-43 180
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000125612 Sycp3-003 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 3e-28 130
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 3e-28 130
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 3e-28 130

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