C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 15 (oligopeptide transporter), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139370 SLC15A4 9606 - 12:128793191-128823983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266771 SLC15A4-001 128793191-128823983 protein_coding
  ENST00000366292 SLC15A4-004 128800807-128815928 retained_intron
  ENST00000376740 SLC15A4-007 128808806-128823522 nonsense_mediated_decay
  ENST00000376744 SLC15A4-002 128793195-128823779 nonsense_mediated_decay
  ENST00000535272 SLC15A4-003 128814960-128819867 processed_transcript
  ENST00000539703 SLC15A4-006 128809081-128823593 processed_transcript
  ENST00000544112 SLC15A4-005 128794173-128810358 retained_intron
  ENST00000545031 SLC15A4-008 128793895-128801701 retained_intron
  ENST00000614634 SLC15A4-201 128793201-128814959 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266771ENST00000366292ENST00000376744ENST00000539703ENST00000544112ENST00000545031ENST00000614634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266771 8.735±0.00 N/A N/A 2.543±0.00 5.696±0.00 2.681±0.29 2.171±1.40 4.034±3.26 2.167±0.00 3.338±0.00 12.283±0.00 6.078±1.76 4.365±0.62 8.431±0.69
ENST00000366292 N/A N/A 0.530±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376744 N/A 2.486±0.00 N/A 2.516±0.12 4.006±0.00 N/A N/A 0.867±0.00 2.221±0.56 3.969±2.03 6.405±2.30 3.475±0.00 N/A 4.233±0.00
ENST00000539703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.589±0.00 N/A N/A N/A
ENST00000544112 N/A N/A 0.914±0.00 N/A 1.219±0.00 N/A 0.500±0.00 N/A 1.597±0.00 N/A N/A N/A N/A N/A
ENST00000545031 N/A N/A N/A 1.316±0.00 1.497±0.00 N/A 0.858±0.00 0.840±0.00 N/A 1.346±0.00 N/A N/A N/A N/A
ENST00000614634 2.386±0.00 4.425±0.00 N/A 4.096±0.00 2.035±0.00 5.505±0.00 1.891±0.00 2.022±1.20 1.118±0.00 N/A N/A 2.825±0.50 1.975±0.64 6.651±2.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Z CIL_00038Z_0001 CGP 12:128267403-128823983
CIL_00006M CIL_00006M_0002 CGP 12:128793191-128984968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005290 IEA L-histidine transmembrane transporter activity
GO:0005765 TAS lysosomal membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006857 IEA oligopeptide transport
GO:0015031 IEA protein transport
GO:0015293 IEA symporter activity
GO:0015817 IEA histidine transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000384 slc15a4 solute carrier family 15, member 4 protein_coding Danio_rerio
ENSMUSG00000029416 Slc15a4 solute carrier family 15, member 4 protein_coding Mus_musculus

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