C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 15, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029416 Slc15a4 10090 - 5:127595664-127632897 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031367 Slc15a4-001 127595664-127617416 protein_coding
  ENSMUST00000124569 Slc15a4-003 127595667-127617226 nonsense_mediated_decay
  ENSMUST00000144603 Slc15a4-006 127601930-127632880 nonsense_mediated_decay
  ENSMUST00000152727 Slc15a4-005 127603807-127609351 protein_coding
  ENSMUST00000153832 Slc15a4-002 127595667-127617418 nonsense_mediated_decay
  ENSMUST00000155321 Slc15a4-004 127608793-127632897 protein_coding
  ENSMUST00000182841 Slc15a4-007 127614446-127617381 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031367ENSMUST00000124569ENSMUST00000153832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031367 2.948±1.10 9.680±3.57 5.592±0.64 3.197±1.93 12.529±4.54 7.225±1.54 1.791±0.73 3.390±2.30 4.102±1.19 11.574±2.90 2.550±0.68 14.269±6.24 3.975±1.91 4.458±0.00
ENSMUST00000124569 N/A N/A N/A 2.785±0.00 N/A N/A 0.681±0.00 N/A N/A N/A N/A 0.859±0.00 0.957±0.07 N/A
ENSMUST00000153832 3.945±0.51 5.076±2.42 1.696±0.00 3.023±1.91 7.428±3.21 5.699±1.12 2.123±0.80 2.598±1.07 3.329±1.65 5.779±1.05 1.271±0.38 3.873±2.16 0.939±0.07 4.037±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Z CIL_00038Z_0002 CGP 5:127241808-127632897
CIL_00006M CIL_00006M_0003 CGP 5:127595664-127708754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005290 IEA L-histidine transmembrane transporter activity
GO:0006857 IEA oligopeptide transport
GO:0015031 IEA protein transport
GO:0015293 IEA symporter activity
GO:0015817 IEA histidine transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000384 slc15a4 solute carrier family 15, member 4 protein_coding Danio_rerio
ENSG00000139370 SLC15A4 solute carrier family 15 (oligopeptide transporter), member 4 protein_coding Homo_sapiens

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