C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000000384-ENSDARG00000091241 CGP 7955 8:37148083-37452039
GeneTranscriptPositionBiotype
ENSDARG00000000384 (slc15a4)
solute carrier family 15, member 4 		ENSDART00000061691 (slc15a4-201) 37223598-37375492 protein_coding
ENSDART00000076101 (slc15a4-001) 37148083-37375492 protein_coding
ENSDART00000128499 (slc15a4-202) 37223598-37375493 protein_coding
ENSDARG00000091241 (GLT1D1)
glycosyltransferase 1 domain containing 1 		ENSDART00000129357 (GLT1D1-201) 37379207-37452039 protein_coding
ENSDART00000154953 (GLT1D1-001) 37379029-37429385 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00006M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139370-ENSG00000151948 CGP 9606 12:128793191-128984968
GeneTranscriptPositionBiotype
ENSG00000139370 (SLC15A4)
solute carrier family 15 (oligopeptide transporter), member 4 		ENST00000266771 (SLC15A4-001) 128793191-128823983 protein_coding
ENST00000366292 (SLC15A4-004) 128800807-128815928 retained_intron
ENST00000376740 (SLC15A4-007) 128808806-128823522 nonsense_mediated_decay
ENST00000376744 (SLC15A4-002) 128793195-128823779 nonsense_mediated_decay
ENST00000535272 (SLC15A4-003) 128814960-128819867 processed_transcript
ENST00000539703 (SLC15A4-006) 128809081-128823593 processed_transcript
ENST00000544112 (SLC15A4-005) 128794173-128810358 retained_intron
ENST00000545031 (SLC15A4-008) 128793895-128801701 retained_intron
ENST00000614634 (SLC15A4-201) 128793201-128814959 protein_coding
ENSG00000151948 (GLT1D1)
glycosyltransferase 1 domain containing 1 		ENST00000281703 (GLT1D1-001) 128853536-128984968 protein_coding
ENST00000413816 (GLT1D1-006) 128853603-128984300 nonsense_mediated_decay
ENST00000441390 (GLT1D1-003) 128853427-128984956 nonsense_mediated_decay
ENST00000442111 (GLT1D1-002) 128853494-128984956 protein_coding
ENST00000537468 (GLT1D1-005) 128864136-128983739 protein_coding
ENST00000539044 (GLT1D1-007) 128853582-128930461 nonsense_mediated_decay
ENSG00000255838 (RP11-753B7.2)
 ENST00000539058 (RP11-753B7.2-001) 128944274-128945203 unprocessed_pseudogene
ENSG00000274695 (RP11-21K12.3)
 ENST00000611714 (RP11-21K12.3-001) 128826836-128827579 lincRNA
ENSG00000279500 (RP11-21K12.2)
 ENST00000623017 (RP11-21K12.2-001) 128813186-128814750 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00006M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029416-ENSMUSG00000049971 CGP 10090 5:127595664-127708754
GeneTranscriptPositionBiotype
ENSMUSG00000029416 (Slc15a4)
solute carrier family 15, member 4 		ENSMUST00000031367 (Slc15a4-001) 127595664-127617416 protein_coding
ENSMUST00000124569 (Slc15a4-003) 127595667-127617226 nonsense_mediated_decay
ENSMUST00000144603 (Slc15a4-006) 127601930-127632880 nonsense_mediated_decay
ENSMUST00000152727 (Slc15a4-005) 127603807-127609351 protein_coding
ENSMUST00000153832 (Slc15a4-002) 127595667-127617418 nonsense_mediated_decay
ENSMUST00000155321 (Slc15a4-004) 127608793-127632897 protein_coding
ENSMUST00000182841 (Slc15a4-007) 127614446-127617381 retained_intron
ENSMUSG00000049971 (Glt1d1)
glycosyltransferase 1 domain containing 1 		ENSMUST00000118139 (Glt1d1-001) 127632262-127708754 protein_coding
ENSMUST00000134529 (Glt1d1-003) 127657033-127689871 retained_intron
ENSMUST00000137157 (Glt1d1-002) 127632262-127691902 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006M_0001ENSDARG00000000384ENSDART00000061691ENSDART00000076101ENSDART00000128499ENSDARG00000091241ENSDART00000129357ENSDART00000154953CIL_00006M_0002ENSG00000139370ENST00000266771ENST00000366292ENST00000376740ENST00000376744ENST00000535272ENST00000539703ENST00000544112ENST00000545031ENST00000614634ENSG00000151948ENST00000281703ENST00000413816ENST00000441390ENST00000442111ENST00000537468ENST00000539044ENSG00000255838ENST00000539058ENSG00000274695ENST00000611714ENSG00000279500ENST00000623017CIL_00006M_0003ENSMUSG00000029416ENSMUST00000031367ENSMUST00000124569ENSMUST00000144603ENSMUST00000152727ENSMUST00000153832ENSMUST00000155321ENSMUST00000182841ENSMUSG00000049971ENSMUST00000118139ENSMUST00000134529ENSMUST00000137157
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006M_0001ENSDARG00000000384ENSDART00000061691ENSDART00000076101ENSDART00000128499ENSDARG00000091241ENSDART00000129357ENSDART00000154953CIL_00006M_0002ENSG00000139370ENST00000266771ENST00000366292ENST00000376744ENST00000539703ENST00000544112ENST00000545031ENST00000614634ENSG00000151948ENST00000281703ENST00000413816ENST00000441390ENST00000442111ENST00000537468ENST00000539044ENSG00000255838ENST00000539058ENSG00000274695ENST00000611714ENSG00000279500ENST00000623017CIL_00006M_0003ENSMUSG00000029416ENSMUST00000031367ENSMUST00000124569ENSMUST00000153832ENSMUSG00000049971ENSMUST00000118139ENSMUST00000134529ENSMUST00000137157
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000384 ENSDART00000061691 N/A N/A N/A 0.518±0.15 N/A N/A 1.817±0.78 N/A 0.144±0.00 N/A N/A N/A N/A N/A
ENSDART00000076101 N/A N/A N/A 0.248±0.12 N/A N/A 0.795±0.15 0.465±0.22 0.310±0.00 N/A 0.411±0.00 N/A N/A N/A
ENSDART00000128499 N/A N/A N/A N/A N/A N/A N/A 1.471±0.00 0.275±0.00 N/A N/A N/A N/A N/A
ENSDARG00000091241 ENSDART00000129357 N/A N/A N/A 1.126±0.00 N/A N/A 1.831±0.00 N/A 0.428±0.00 N/A N/A N/A N/A N/A
ENSDART00000154953 N/A N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139370 ENST00000266771 8.735±0.00 N/A N/A 2.543±0.00 5.696±0.00 2.681±0.29 2.171±1.40 4.034±3.26 2.167±0.00 3.338±0.00 12.283±0.00 6.078±1.76 4.365±0.62 8.431±0.69
ENST00000366292 N/A N/A 0.530±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376744 N/A 2.486±0.00 N/A 2.516±0.12 4.006±0.00 N/A N/A 0.867±0.00 2.221±0.56 3.969±2.03 6.405±2.30 3.475±0.00 N/A 4.233±0.00
ENST00000535272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.589±0.00 N/A N/A N/A
ENST00000544112 N/A N/A 0.914±0.00 N/A 1.219±0.00 N/A 0.500±0.00 N/A 1.597±0.00 N/A N/A N/A N/A N/A
ENST00000545031 N/A N/A N/A 1.316±0.00 1.497±0.00 N/A 0.858±0.00 0.840±0.00 N/A 1.346±0.00 N/A N/A N/A N/A
ENST00000614634 2.386±0.00 4.425±0.00 N/A 4.096±0.00 2.035±0.00 5.505±0.00 1.891±0.00 2.022±1.20 1.118±0.00 N/A N/A 2.825±0.50 1.975±0.64 6.651±2.90
ENSG00000151948 ENST00000281703 0.623±0.00 0.090±0.00 N/A 4.532±0.00 N/A N/A 0.303±0.00 0.187±0.00 2.949±0.00 N/A N/A 0.133±0.03 0.329±0.01 N/A
ENST00000413816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A
ENST00000441390 N/A 0.132±0.00 N/A 1.488±0.00 N/A N/A 0.105±0.00 N/A N/A 0.734±0.00 0.294±0.20 N/A N/A 4.890±0.00
ENST00000442111 N/A N/A N/A 7.596±0.00 N/A 0.275±0.00 0.100±0.00 1.294±0.00 3.788±0.00 N/A N/A 0.092±0.00 0.428±0.00 6.460±1.90
ENST00000537468 N/A N/A 0.350±0.00 4.145±0.00 0.178±0.14 0.160±0.09 0.285±0.00 3.832±0.00 0.116±0.00 0.722±0.00 N/A 0.050±0.00 N/A 7.823±0.00
ENST00000539044 N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000255838 ENST00000539058 N/A 0.026±0.00 N/A 0.313±0.00 N/A N/A 0.024±0.00 N/A N/A N/A 0.023±0.00 N/A N/A N/A
ENSG00000274695 ENST00000611714 0.122±0.00 0.307±0.00 0.389±0.00 0.165±0.07 0.074±0.00 0.059±0.01 0.025±0.00 0.306±0.21 0.102±0.00 N/A 0.119±0.00 0.056±0.03 N/A 0.328±0.11
ENSG00000279500 ENST00000623017 0.044±0.00 0.365±0.00 0.991±0.00 0.433±0.10 0.395±0.28 0.151±0.00 0.393±0.24 0.562±0.26 0.053±0.00 0.053±0.00 1.963±1.42 0.513±0.57 0.048±0.02 0.273±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029416 ENSMUST00000031367 2.948±1.10 9.680±3.57 5.592±0.64 3.197±1.93 12.529±4.54 7.225±1.54 1.791±0.73 3.390±2.30 4.102±1.19 11.574±2.90 2.550±0.68 14.269±6.24 3.975±1.91 4.458±0.00
ENSMUST00000124569 N/A N/A N/A 2.785±0.00 N/A N/A 0.681±0.00 N/A N/A N/A N/A 0.859±0.00 0.957±0.07 N/A
ENSMUST00000144603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153832 3.945±0.51 5.076±2.42 1.696±0.00 3.023±1.91 7.428±3.21 5.699±1.12 2.123±0.80 2.598±1.07 3.329±1.65 5.779±1.05 1.271±0.38 3.873±2.16 0.939±0.07 4.037±0.45
ENSMUST00000155321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049971 ENSMUST00000118139 0.075±0.03 0.064±0.03 0.043±0.00 2.658±2.59 0.255±0.12 1.811±0.09 0.012±0.00 0.568±0.25 0.944±0.99 0.231±0.11 0.016±0.00 0.066±0.02 0.574±0.30 20.734±0.80
ENSMUST00000134529 0.368±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.304±0.00 3.024±0.00 N/A
ENSMUST00000137157 0.051±0.02 N/A N/A N/A 0.099±0.02 N/A 0.019±0.00 N/A 0.053±0.00 0.153±0.00 N/A 0.053±0.05 0.082±0.00 N/A

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