C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423960 FOXN4-004 ENSG00000139445 9606 - 12:109279761-109290252 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyOvaryPlacentaTestisENST00000423960
Transcript ID Breast Kidney Ovary Placenta Testis
ENST00000423960 0.082±0.00 0.062±0.00 0.168±0.16 0.041±0.00 15.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VV CIL_0001VV_0001 CGP 12:109116595-109309220
CIL_0001VO CIL_0001VO_0001 CGP 12:109277979-109455523

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 ISS enhancer sequence-specific DNA binding
GO:0001947 ISS heart looping
GO:0003682 ISS chromatin binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0008016 ISS regulation of heart contraction
GO:0010842 ISS retina layer formation
GO:0035881 ISS amacrine cell differentiation
GO:0036302 ISS atrioventricular canal development
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060579 ISS ventral spinal cord interneuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129530 Foxn4-002 nonsense_mediated_decay Mus_musculus 0 1127
ENSMUST00000044790 Foxn4-001 protein_coding Mus_musculus 0 931
ENSMUST00000144050 Foxn4-003 protein_coding Mus_musculus 1.99993e-41 174

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