C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355216 FOXN4-002 ENSG00000139445 9606 - 12:109277979-109309220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungOvaryTestisENST00000355216
Transcript ID Kidney Lung Ovary Testis
ENST00000355216 0.105±0.00 0.077±0.01 0.023±0.00 0.401±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VV CIL_0001VV_0001 CGP 12:109116595-109309220
CIL_0001VO CIL_0001VO_0001 CGP 12:109277979-109455523

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 ISS enhancer sequence-specific DNA binding
GO:0001947 ISS heart looping
GO:0003682 ISS chromatin binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS:IEA regulation of transcription, DNA-templated
GO:0008016 ISS regulation of heart contraction
GO:0010842 ISS retina layer formation
GO:0035881 ISS amacrine cell differentiation
GO:0036302 ISS atrioventricular canal development
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060579 ISS ventral spinal cord interneuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044790 Foxn4-001 protein_coding Mus_musculus 0 992
ENSMUST00000129530 Foxn4-002 nonsense_mediated_decay Mus_musculus 0 931

Loading