C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thioredoxin-related transmembrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139921 TMX1 9606 + 14:51240162-51257546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000457354 TMX1-001 51240168-51257546 protein_coding
  ENST00000555574 TMX1-002 51240162-51245851 retained_intron
  ENST00000556683 TMX1-003 51240250-51255654 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457354ENST00000555574ENST00000556683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457354 5.013±0.00 5.685±0.00 0.411±0.00 1.778±0.25 3.521±1.01 4.685±0.18 1.044±0.31 2.097±0.09 2.134±0.08 3.722±0.60 1.259±0.88 3.827±0.74 4.713±1.00 1.950±0.08
ENST00000555574 N/A N/A 0.868±0.00 N/A N/A N/A N/A N/A N/A N/A 1.032±0.00 N/A 9.686±0.00 N/A
ENST00000556683 10.650±0.00 5.701±0.00 0.996±0.00 3.769±0.31 7.279±1.00 5.872±0.10 1.861±0.67 4.510±0.00 4.839±2.83 5.478±1.34 0.577±0.18 3.568±1.86 5.839±5.06 5.792±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069N CIL_00069N_0002 CGP 14:50975262-51257546
CIL_00069M CIL_00069M_0002 CGP 14:51240162-51730727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003756 IBA protein disulfide isomerase activity
GO:0005730 IDA nucleolus
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006457 IBA protein folding
GO:0015036 IDA disulfide oxidoreductase activity
GO:0016021 IEA integral component of membrane
GO:0034976 IBA response to endoplasmic reticulum stress
GO:0045454 IEA cell redox homeostasis
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019487 tmx1 thioredoxin-related transmembrane protein 1 protein_coding Danio_rerio
ENSMUSG00000021072 Tmx1 thioredoxin-related transmembrane protein 1 protein_coding Mus_musculus

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