C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140090 SLC24A4 9606 + 14:92322581-92501483 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000393265 SLC24A4-003 92322581-92496251 protein_coding
  ENST00000525557 SLC24A4-007 92439364-92496252 protein_coding
  ENST00000526482 SLC24A4-005 92452766-92496252 retained_intron
  ENST00000531433 SLC24A4-002 92323193-92496251 protein_coding
  ENST00000532405 SLC24A4-001 92323605-92501483 protein_coding
  ENST00000554461 SLC24A4-009 92408379-92442753 protein_coding
  ENST00000554925 SLC24A4-008 92443365-92493922 retained_intron
  ENST00000556739 SLC24A4-004 92450218-92462747 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000393265ENST00000525557ENST00000526482ENST00000531433ENST00000532405ENST00000554925ENST00000556739
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000393265 N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A 0.105±0.00 N/A N/A N/A
ENST00000525557 N/A N/A N/A 0.041±0.00 N/A 0.010±0.00 N/A N/A N/A N/A 0.022±0.00 0.132±0.09
ENST00000526482 N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.120±0.00 0.162±0.06 N/A 0.032±0.00 N/A
ENST00000531433 N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532405 0.126±0.00 0.207±0.00 1.434±0.00 0.081±0.06 0.053±0.00 N/A 0.042±0.02 N/A N/A 0.001±0.00 0.042±0.00 0.033±0.01
ENST00000554925 N/A N/A N/A N/A N/A 0.029±0.00 0.084±0.00 N/A N/A 0.064±0.00 N/A 0.143±0.00
ENST00000556739 N/A 0.173±0.00 N/A 0.093±0.00 N/A N/A N/A 0.066±0.00 0.200±0.00 0.021±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0002 CGP 14:92121937-92501483
CIL_000539 CIL_000539_0001 CGP 14:92322581-92688994

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006813 IEA potassium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007608 ISS sensory perception of smell
GO:0008273 IEA calcium, potassium:sodium antiporter activity
GO:0015293 IEA symporter activity
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0050896 IEA response to stimulus
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport
GO:0097186 ISS amelogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015425 slc24a4a solute carrier family 24 (sodium/potassium/calcium exchanger), member 4a protein_coding Danio_rerio
ENSDARG00000067509 slc24a4b solute carrier family 24 (sodium/potassium/calcium exchanger), member 4b protein_coding Danio_rerio
ENSMUSG00000041771 Slc24a4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 protein_coding Mus_musculus

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