C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532405 SLC24A4-001 ENSG00000140090 9606 + 14:92323605-92501483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaENST00000532405
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta
ENST00000532405 0.126±0.00 0.207±0.00 1.434±0.00 0.081±0.06 0.053±0.00 0.042±0.02 0.001±0.00 0.042±0.00 0.033±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0002 CGP 14:92121937-92501483
CIL_000539 CIL_000539_0001 CGP 14:92322581-92688994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006813 IEA potassium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007608 ISS sensory perception of smell
GO:0008273 IEA calcium, potassium:sodium antiporter activity
GO:0015293 IEA symporter activity
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0050896 IEA response to stimulus
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport
GO:0097186 ISS amelogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079020 Slc24a4-001 protein_coding Mus_musculus 0 2394
ENSMUST00000161325 Slc24a4-003 protein_coding Mus_musculus 0 1258
ENSMUST00000159329 Slc24a4-002 protein_coding Mus_musculus 0 1040
ENSMUST00000107158 Slc24a2-201 protein_coding Mus_musculus 8e-18 99
ENSMUST00000107155 Slc24a2-006 protein_coding Mus_musculus 8e-18 99
ENSMUST00000044990 Slc24a2-005 protein_coding Mus_musculus 8e-18 99
ENSMUST00000134643 Slc24a2-004 processed_transcript Mus_musculus 8e-18 99
ENSMUST00000134248 Slc24a2-003 processed_transcript Mus_musculus 8e-18 99
ENSMUST00000155361 Slc24a2-002 processed_transcript Mus_musculus 8e-18 99
ENSMUST00000107157 Slc24a2-001 protein_coding Mus_musculus 8e-18 99
ENSMUST00000037798 Slc24a1-201 protein_coding Mus_musculus 0.000000000000005 90

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