C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 14kDa (homologous Alu RNA binding protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267884 SRP14-001 ENSG00000140319 9606 - 15:40035739-40039188 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267884 22.083±0.00 31.597±0.00 9.535±0.00 40.588±9.22 17.183±0.77 20.316±8.45 9.418±0.73 22.867±0.62 15.451±2.39 16.503±3.05 15.548±7.41 43.545±23.14 56.464±18.17 32.926±19.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0001 VISTA 15:39791359-40393937
CIL_0006QZ CIL_0006QZ_0001 CGP 15:39934146-40039188
CIL_0006QY CIL_0006QY_0001 CGP 15:40035739-40108892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005786 IDA:IEA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 IEA:TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045047 IMP protein targeting to ER
GO:0045171 IDA intercellular bridge
GO:0048500 IEA signal recognition particle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009693 Srp14-001 protein_coding Mus_musculus 0 377
ENSMUST00000110862 Srp14-003 protein_coding Mus_musculus 0 248

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