C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 11, type 2, OB-cadherin (osteoblast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140937 CDH11 9606 - 16:64943753-65126112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268603 CDH11-001 64943753-65122198 protein_coding
  ENST00000394156 CDH11-002 64943753-65122036 protein_coding
  ENST00000562325 CDH11-017 65004803-65122092 protein_coding
  ENST00000562712 CDH11-010 65004709-65059678 protein_coding
  ENST00000562882 CDH11-016 65004766-65072213 protein_coding
  ENST00000562998 CDH11-015 65004660-65122065 protein_coding
  ENST00000563255 CDH11-008 65053899-65124188 processed_transcript
  ENST00000563492 CDH11-005 65053804-65126112 processed_transcript
  ENST00000564317 CDH11-007 65004673-65122365 protein_coding
  ENST00000564770 CDH11-014 65094607-65122015 processed_transcript
  ENST00000565210 CDH11-011 65006862-65122046 processed_transcript
  ENST00000566827 CDH11-004 64947547-65121930 protein_coding
  ENST00000567934 CDH11-003 64991913-65072260 protein_coding
  ENST00000568340 CDH11-009 65004853-65124286 processed_transcript
  ENST00000569095 CDH11-013 64968434-64972949 processed_transcript
  ENST00000569128 CDH11-012 64991343-64998629 retained_intron
  ENST00000569624 CDH11-018 65004642-65124292 processed_transcript
  ENST00000569783 CDH11-006 65118801-65122057 processed_transcript
  ENST00000619158 CDH11-019 64984696-64988334 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268603ENST00000394156ENST00000565210ENST00000566827ENST00000567934ENST00000569095ENST00000619158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268603 N/A 2.590±0.00 0.683±0.00 1.035±0.14 3.680±1.77 1.632±0.56 0.167±0.00 2.534±0.00 1.871±1.85 3.380±0.31 N/A 6.034±2.21 6.786±6.03 2.795±2.48
ENST00000394156 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A 0.256±0.00
ENST00000565210 N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A
ENST00000566827 5.800±0.00 8.538±0.00 0.818±0.00 3.594±1.33 4.318±1.64 2.741±1.33 1.939±0.00 4.799±0.00 N/A 6.993±3.85 0.510±0.30 33.197±31.81 38.602±0.00 6.240±4.66
ENST00000567934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A
ENST00000569095 N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A
ENST00000619158 N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A 1.932±0.00 N/A 2.717±0.00 N/A 0.275±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001503 NAS ossification
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021957 IEA corticospinal tract morphogenesis
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021442 cdh11 cadherin 11, osteoblast protein_coding Danio_rerio
ENSMUSG00000031673 Cdh11 cadherin 11 protein_coding Mus_musculus

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