C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 11, type 2, OB-cadherin (osteoblast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566827 CDH11-004 ENSG00000140937 9606 - 16:64947547-65121930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000566827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000566827 5.800±0.00 8.538±0.00 0.818±0.00 3.594±1.33 4.318±1.64 2.741±1.33 1.939±0.00 4.799±0.00 6.993±3.85 0.510±0.30 33.197±31.81 38.602±0.00 6.240±4.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075190 Cdh11-201 protein_coding Mus_musculus 0 2892
ENSMUST00000096485 Gm21811-001 unprocessed_pseudogene Mus_musculus 0 907
ENSMUST00000155660 Gm6483-003 processed_transcript Mus_musculus 0 902
ENSMUST00000139264 2610005L07Rik-002 transcribed_unprocessed_pseudogene Mus_musculus 0 861
ENSMUST00000127799 Gm6483-001 protein_coding Mus_musculus 0 704
ENSMUST00000153710 Gm6483-002 protein_coding Mus_musculus 0 704
ENSMUST00000140111 2610005L07Rik-001 processed_transcript Mus_musculus 0 691
ENSMUST00000153748 6820431F20Rik-001 processed_transcript Mus_musculus 0 691
ENSMUST00000150051 6820431F20Rik-003 transcribed_unprocessed_pseudogene Mus_musculus 0 684
ENSMUST00000097690 Gm10557-201 pseudogene Mus_musculus 0 682
ENSMUST00000178995 Gm21092-202 protein_coding Mus_musculus 0 675
ENSMUST00000178451 Gm21092-201 protein_coding Mus_musculus 0 654
ENSMUST00000144307 Gm6483-006 retained_intron Mus_musculus 0 494
ENSMUST00000133001 Gm6483-004 processed_transcript Mus_musculus 0 481
ENSMUST00000136929 Gm6483-005 retained_intron Mus_musculus 0 390

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