C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial sarcoma translocation, chromosome 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141380 SS18 9606 - 18:26016253-26091217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269137 SS18-001 26018014-26090901 protein_coding
  ENST00000269138 SS18-007 26018007-26090598 nonsense_mediated_decay
  ENST00000415083 SS18-003 26016253-26090625 protein_coding
  ENST00000539244 SS18-006 26035091-26090613 nonsense_mediated_decay
  ENST00000542420 SS18-002 26017343-26091217 protein_coding
  ENST00000577572 SS18-011 26057699-26090625 nonsense_mediated_decay
  ENST00000577636 SS18-026 26052743-26091192 nonsense_mediated_decay
  ENST00000577751 SS18-008 26064832-26090135 processed_transcript
  ENST00000578595 SS18-021 26080371-26090100 processed_transcript
  ENST00000578700 SS18-010 26052823-26091216 nonsense_mediated_decay
  ENST00000578954 SS18-014 26052682-26090652 nonsense_mediated_decay
  ENST00000579061 SS18-024 26052705-26091192 protein_coding
  ENST00000579640 SS18-004 26017885-26090610 nonsense_mediated_decay
  ENST00000580003 SS18-012 26068260-26078386 retained_intron
  ENST00000580642 SS18-019 26078103-26090625 nonsense_mediated_decay
  ENST00000580751 SS18-018 26078076-26090625 nonsense_mediated_decay
  ENST00000580958 SS18-013 26018350-26035614 retained_intron
  ENST00000581021 SS18-022 26057695-26090135 protein_coding
  ENST00000581570 SS18-016 26057732-26090608 nonsense_mediated_decay
  ENST00000582092 SS18-027 26023613-26035065 processed_transcript
  ENST00000582448 SS18-009 26057719-26091192 nonsense_mediated_decay
  ENST00000582792 SS18-017 26057612-26090597 nonsense_mediated_decay
  ENST00000583595 SS18-015 26082383-26086027 processed_transcript
  ENST00000584083 SS18-023 26052771-26090096 protein_coding
  ENST00000585121 SS18-005 26018120-26090597 nonsense_mediated_decay
  ENST00000585241 SS18-025 26039410-26090625 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269137ENST00000415083ENST00000542420ENST00000580003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269137 N/A N/A 3.123±0.00 N/A 4.659±0.00 N/A 2.584±0.00 N/A 4.224±0.00 N/A 1.507±0.00 6.621±0.00 N/A N/A
ENST00000415083 4.784±0.00 5.591±0.00 0.937±0.00 5.456±1.09 11.674±0.00 5.357±0.00 4.664±1.65 10.251±0.00 2.499±0.29 7.562±3.62 1.011±0.30 10.441±7.70 4.728±1.36 8.094±4.00
ENST00000542420 N/A N/A N/A N/A 2.531±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580003 N/A N/A 7.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0008CS CIL_0008CS_0001 VISTA 18:25552759-26154861
CIL_0006ET CIL_0006ET_0001 CGP 18:26016253-26193355

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000902 IEA cell morphogenesis
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005881 IEA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035556 IEA intracellular signal transduction
GO:0042493 IEA response to drug
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048013 IEA ephrin receptor signaling pathway
GO:0071564 IEA npBAF complex
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000037013 Ss18 synovial sarcoma translocation, Chromosome 18 protein_coding Mus_musculus

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