| Source ID |
Type |
Tax ID |
Position |
| ZNF521 |
UCNEbase |
7955 |
20:18251540-18251797  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LU_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000134504' => 'potassium channel tetramerization domain containing 1',
'ENSG00000141380' => 'synovial sarcoma translocation, chromosome 18',
'ENSG00000141384' => 'TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa',
'ENSG00000154611' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSG00000188985' => 'dihydrofolate reductase pseudogene 1',
'ENSG00000198795' => 'zinc finger protein 521',
'ENSG00000207160' => 'RNA, U6 small nuclear 1289, pseudogene',
'ENSG00000229248' => 'WW domain binding protein 2 pseudogene 1',
'ENSG00000242216' => 'RNA, 7SL, cytoplasmic 97, pseudogene',
'ENSG00000243925' => 'ribosomal protein S24 pseudogene 18',
'ENSG00000252846' => null,
'ENSG00000260372' => 'AQP4 antisense RNA 1',
'ENSG00000263553' => null,
'ENSG00000263829' => 'family with sequence similarity 60, member B pseudogene',
'ENSG00000263846' => 'cytokine induced apoptosis inhibitor 1 pseudogene',
'ENSG00000263862' => 'long intergenic non-protein coding RNA 1543',
'ENSG00000264193' => null,
'ENSG00000264345' => null,
'ENSG00000264434' => null,
'ENSG00000264911' => null,
'ENSG00000265485' => null,
'ENSG00000265552' => null,
'ENSG00000266227' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2',
'ENSG00000266237' => null,
'ENSG00000266520' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 1',
'ENSG00000266573' => null,
'ENSG00000266809' => null,
'ENSG00000275805' => null,
'ENSG00000276221' => 'microRNA 8057',
'ENSG00000277534' => null,
'ENSG00000279439' => null,
'ENSMUSG00000024420' => 'zinc finger protein 521',
'ENSMUSG00000036225' => 'potassium channel tetramerisation domain containing 1',
'ENSMUSG00000036743' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSMUSG00000037013' => 'synovial sarcoma translocation, Chromosome 18',
'ENSMUSG00000053740' => 'predicted pseudogene 6457',
'ENSMUSG00000054321' => 'TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor',
'ENSMUSG00000055795' => 'predicted gene 5160',
'ENSMUSG00000071867' => 'predicted gene 6304',
'ENSMUSG00000094306' => 'predicted gene, 24924',
'ENSMUSG00000096288' => 'predicted gene, 22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
),
'gene_name_arr' => array(
'ENSG00000134504' => 'KCTD1',
'ENSG00000141380' => 'SS18',
'ENSG00000141384' => 'TAF4B',
'ENSG00000154611' => 'PSMA8',
'ENSG00000188985' => 'DHFRP1',
'ENSG00000198795' => 'ZNF521',
'ENSG00000207160' => 'RNU6-1289P',
'ENSG00000229248' => 'WBP2P1',
'ENSG00000242216' => 'RN7SL97P',
'ENSG00000243925' => 'RPS24P18',
'ENSG00000252846' => 'AC090206.1',
'ENSG00000260372' => 'AQP4-AS1',
'ENSG00000263553' => 'RP11-449D8.2',
'ENSG00000263829' => 'FAM60BP',
'ENSG00000263846' => 'CIAPIN1P',
'ENSG00000263862' => 'RP11-107K17.1',
'ENSG00000264193' => 'RP11-737G21.1',
'ENSG00000264345' => 'RP11-958F21.1',
'ENSG00000264434' => 'CTD-2006O16.2',
'ENSG00000264911' => 'RP11-107K17.2',
'ENSG00000265485' => 'RP11-449D8.1',
'ENSG00000265552' => 'RP11-958F21.3',
'ENSG00000266227' => 'NPM1P2',
'ENSG00000266237' => 'RP11-25D3.1',
'ENSG00000266520' => 'RAC1P1',
'ENSG00000266573' => 'RP11-449D8.5',
'ENSG00000266809' => 'RP11-449D8.3',
'ENSG00000275805' => 'RP11-349H17.2',
'ENSG00000276221' => 'MIR8057',
'ENSG00000277534' => 'RP11-9E17.1',
'ENSG00000279439' => 'CTD-2576N18.1',
'ENSMUSG00000024420' => 'Zfp521',
'ENSMUSG00000036225' => 'Kctd1',
'ENSMUSG00000036743' => 'Psma8',
'ENSMUSG00000037013' => 'Ss18',
'ENSMUSG00000053740' => 'Gm6457',
'ENSMUSG00000054321' => 'Taf4b',
'ENSMUSG00000055795' => 'Gm5160',
'ENSMUSG00000071867' => 'Gm6304',
'ENSMUSG00000094306' => 'Gm24924',
'ENSMUSG00000096288' => 'Gm22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 67 => 'Brain',
(int) 106 => 'Breast',
(int) 141 => 'Colon',
(int) 167 => 'Heart',
(int) 200 => 'Kidney',
(int) 223 => 'Liver',
(int) 252 => 'Lung',
(int) 279 => 'Muscle',
(int) 302 => 'Ovary',
(int) 347 => 'Placenta',
(int) 373 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 107,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000317932' => array(
'start' => '26454913',
'end' => '26629242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-201'
),
'ENST00000408011' => array(
'start' => '26454974',
'end' => '26549435',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-003'
),
'ENST00000417602' => array(
'start' => '26454913',
'end' => '26549814',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-202'
),
'ENST00000577255' => array(
'start' => '26455713',
'end' => '26476891',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD1-004'
),
'ENST00000578973' => array(
'start' => '26459789',
'end' => '26546999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-006'
),
'ENST00000579973' => array(
'start' => '26454910',
'end' => '26640344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-001'
),
'ENST00000580059' => array(
'start' => '26455498',
'end' => '26547118',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-005'
),
'ENST00000580191' => array(
'start' => '26455760',
'end' => '26657401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-009'
),
'ENST00000580638' => array(
'start' => '26455892',
'end' => '26549819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-002'
),
'ENST00000582494' => array(
'start' => '26455770',
'end' => '26460876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-007'
),
'ENST00000584630' => array(
'start' => '26581162',
'end' => '26657394',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-008'
),
'ENST00000269137' => array(
'start' => '26018014',
'end' => '26090901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-001'
),
'ENST00000269138' => array(
'start' => '26018007',
'end' => '26090598',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-007'
),
'ENST00000415083' => array(
'start' => '26016253',
'end' => '26090625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-003'
),
'ENST00000539244' => array(
'start' => '26035091',
'end' => '26090613',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-006'
),
'ENST00000542420' => array(
'start' => '26017343',
'end' => '26091217',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-002'
),
'ENST00000577572' => array(
'start' => '26057699',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-011'
),
'ENST00000577636' => array(
'start' => '26052743',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-026'
),
'ENST00000577751' => array(
'start' => '26064832',
'end' => '26090135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-008'
),
'ENST00000578595' => array(
'start' => '26080371',
'end' => '26090100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-021'
),
'ENST00000578700' => array(
'start' => '26052823',
'end' => '26091216',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-010'
),
'ENST00000578954' => array(
'start' => '26052682',
'end' => '26090652',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-014'
),
'ENST00000579061' => array(
'start' => '26052705',
'end' => '26091192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-024'
),
'ENST00000579640' => array(
'start' => '26017885',
'end' => '26090610',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-004'
),
'ENST00000580003' => array(
'start' => '26068260',
'end' => '26078386',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-012'
),
'ENST00000580642' => array(
'start' => '26078103',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-019'
),
'ENST00000580751' => array(
'start' => '26078076',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-018'
),
'ENST00000580958' => array(
'start' => '26018350',
'end' => '26035614',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-013'
),
'ENST00000581021' => array(
'start' => '26057695',
'end' => '26090135',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-022'
),
'ENST00000581570' => array(
'start' => '26057732',
'end' => '26090608',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-016'
),
'ENST00000582092' => array(
'start' => '26023613',
'end' => '26035065',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-027'
),
'ENST00000582448' => array(
'start' => '26057719',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-009'
),
'ENST00000582792' => array(
'start' => '26057612',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-017'
),
'ENST00000583595' => array(
'start' => '26082383',
'end' => '26086027',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-015'
),
'ENST00000584083' => array(
'start' => '26052771',
'end' => '26090096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-023'
),
'ENST00000585121' => array(
'start' => '26018120',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-005'
),
'ENST00000585241' => array(
'start' => '26039410',
'end' => '26090625',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-025'
),
'ENST00000269142' => array(
'start' => '26225936',
'end' => '26391685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-002'
),
'ENST00000400466' => array(
'start' => '26226445',
'end' => '26391678',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-201'
),
'ENST00000418698' => array(
'start' => '26226883',
'end' => '26391683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAF4B-003'
),
'ENST00000578121' => array(
'start' => '26226486',
'end' => '26390164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-001'
),
'ENST00000308268' => array(
'start' => '26133877',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-001'
),
'ENST00000343848' => array(
'start' => '26133874',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-003'
),
'ENST00000415576' => array(
'start' => '26133852',
'end' => '26192824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-002'
),
'ENST00000538664' => array(
'start' => '26133852',
'end' => '26193355',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PSMA8-004'
),
'ENST00000612461' => array(
'start' => '26140086',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-201'
),
'ENST00000579682' => array(
'start' => '26170726',
'end' => '26171284',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'DHFRP1-001'
),
'ENST00000361524' => array(
'start' => '25061926',
'end' => '25352152',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-001'
),
'ENST00000399425' => array(
'start' => '25062451',
'end' => '25352071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZNF521-004'
),
'ENST00000538137' => array(
'start' => '25062593',
'end' => '25352155',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-002'
),
'ENST00000577461' => array(
'start' => '25322137',
'end' => '25351193',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-009'
),
'ENST00000577720' => array(
'start' => '25227203',
'end' => '25231530',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-012'
),
'ENST00000577775' => array(
'start' => '25136718',
'end' => '25224789',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-013'
),
'ENST00000577801' => array(
'start' => '25227244',
'end' => '25351747',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-010'
),
'ENST00000579111' => array(
'start' => '25227607',
'end' => '25352190',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-005'
),
'ENST00000580488' => array(
'start' => '25227486',
'end' => '25351615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-008'
),
'ENST00000581869' => array(
'start' => '25227388',
'end' => '25302034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-014'
),
'ENST00000582584' => array(
'start' => '25315524',
'end' => '25352149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-007'
),
'ENST00000583005' => array(
'start' => '25227587',
'end' => '25352170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-006'
),
'ENST00000583398' => array(
'start' => '25227620',
'end' => '25322335',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZNF521-011'
),
'ENST00000584787' => array(
'start' => '25062425',
'end' => '25352148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-003'
),
'ENST00000384431' => array(
'start' => '26366301',
'end' => '26366406',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1289P-201'
),
'ENST00000427605' => array(
'start' => '25016434',
'end' => '25017204',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'WBP2P1-001'
),
'ENST00000486780' => array(
'start' => '25818234',
'end' => '25818532',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL97P-201'
),
'ENST00000468051' => array(
'start' => '26098839',
'end' => '26099226',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS24P18-001'
),
'ENST00000517037' => array(
'start' => '26586714',
'end' => '26586798',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC090206.1-201'
),
'ENST00000568797' => array(
'start' => '26865308',
'end' => '26935946',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-001'
),
'ENST00000578701' => array(
'start' => '26865307',
'end' => '27190698',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-003'
),
'ENST00000579964' => array(
'start' => '26655743',
'end' => '26933085',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-004'
),
'ENST00000582605' => array(
'start' => '26655742',
'end' => '26930757',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-002'
),
'ENST00000578490' => array(
'start' => '24673163',
'end' => '24674348',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.2-001'
),
'ENST00000578364' => array(
'start' => '26255698',
'end' => '26256355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FAM60BP-001'
),
'ENST00000584883' => array(
'start' => '26599408',
'end' => '26600338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CIAPIN1P-001'
),
'ENST00000578367' => array(
'start' => '26422995',
'end' => '26426101',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-107K17.1-001'
),
'ENST00000583887' => array(
'start' => '25953216',
'end' => '25953468',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-737G21.1-001'
),
'ENST00000580984' => array(
'start' => '24933487',
'end' => '24987682',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-002'
),
'ENST00000582697' => array(
'start' => '24954207',
'end' => '24987665',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-001'
),
'ENST00000580645' => array(
'start' => '25302126',
'end' => '25302960',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2006O16.2-001'
),
'ENST00000582910' => array(
'start' => '26348347',
'end' => '26349004',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-107K17.2-001'
),
'ENST00000577994' => array(
'start' => '24628182',
'end' => '24662198',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-001'
),
'ENST00000583558' => array(
'start' => '24656993',
'end' => '24660405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-002'
),
'ENST00000578129' => array(
'start' => '25055600',
'end' => '25056760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.3-001'
),
'ENST00000578162' => array(
'start' => '26204869',
'end' => '26205904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P2-001'
),
'ENST00000580975' => array(
'start' => '26266009',
'end' => '26267409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-25D3.1-001'
),
'ENST00000578535' => array(
'start' => '24685772',
'end' => '24686351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P1-001'
),
'ENST00000577354' => array(
'start' => '24725781',
'end' => '24766645',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-001'
),
'ENST00000582650' => array(
'start' => '24725853',
'end' => '24929076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-002'
),
'ENST00000583794' => array(
'start' => '24725944',
'end' => '24744878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-003'
),
'ENST00000579571' => array(
'start' => '24689914',
'end' => '24690161',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-449D8.3-001'
),
'ENST00000615734' => array(
'start' => '26565723',
'end' => '26575626',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-349H17.2-001'
),
'ENST00000620957' => array(
'start' => '26591467',
'end' => '26591535',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8057-201'
),
'ENST00000620414' => array(
'start' => '26542971',
'end' => '26545791',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-9E17.1-001'
),
'ENST00000624795' => array(
'start' => '25200976',
'end' => '25202837',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2576N18.1-001'
),
'ENSMUST00000025288' => array(
'start' => '13687013',
'end' => '13972733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp521-201'
),
'ENSMUST00000025992' => array(
'start' => '14968685',
'end' => '15151446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-201'
),
'ENSMUST00000168989' => array(
'start' => '14968685',
'end' => '15063582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-202'
),
'ENSMUST00000040860' => array(
'start' => '14706151',
'end' => '14762299',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psma8-201'
),
'ENSMUST00000040924' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-201'
),
'ENSMUST00000040964' => array(
'start' => '14624198',
'end' => '14682766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-202'
),
'ENSMUST00000092041' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-203'
),
'ENSMUST00000066378' => array(
'start' => '14570101',
'end' => '14570915',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6457-201'
),
'ENSMUST00000169862' => array(
'start' => '14783245',
'end' => '14900359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taf4b-201'
),
'ENSMUST00000069552' => array(
'start' => '14424868',
'end' => '14425311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5160-201'
),
'ENSMUST00000096579' => array(
'start' => '15011246',
'end' => '15011692',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6304-201'
),
'ENSMUST00000084007' => array(
'start' => '14647767',
'end' => '14647930',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24924-201'
),
'ENSMUST00000083216' => array(
'start' => '13209702',
'end' => '13209808',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22251-201'
),
'ENSDART00000156951' => array(
'start' => '2335096',
'end' => '2351472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-305a18.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
'ENSG00000141380' => array(
[maximum depth reached]
),
'ENSG00000141384' => array(
[maximum depth reached]
),
'ENSG00000154611' => array(
[maximum depth reached]
),
'ENSG00000188985' => array(
[maximum depth reached]
),
'ENSG00000198795' => array(
[maximum depth reached]
),
'ENSG00000207160' => array(
[maximum depth reached]
),
'ENSG00000243925' => array(
[maximum depth reached]
),
'ENSG00000260372' => array(
[maximum depth reached]
),
'ENSG00000263553' => array(
[maximum depth reached]
),
'ENSG00000263829' => array(
[maximum depth reached]
),
'ENSG00000263846' => array(
[maximum depth reached]
),
'ENSG00000263862' => array(
[maximum depth reached]
),
'ENSG00000264345' => array(
[maximum depth reached]
),
'ENSG00000264434' => array(
[maximum depth reached]
),
'ENSG00000264911' => array(
[maximum depth reached]
),
'ENSG00000265485' => array(
[maximum depth reached]
),
'ENSG00000265552' => array(
[maximum depth reached]
),
'ENSG00000266227' => array(
[maximum depth reached]
),
'ENSG00000266237' => array(
[maximum depth reached]
),
'ENSG00000266520' => array(
[maximum depth reached]
),
'ENSG00000266573' => array(
[maximum depth reached]
),
'ENSG00000275805' => array(
[maximum depth reached]
),
'ENSG00000277534' => array(
[maximum depth reached]
),
'ENSG00000279439' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Kidney',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Bladder',
(int) 52 => 'Breast',
(int) 53 => 'Heart',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Breast',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Heart',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Testis',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Ovary',
(int) 127 => 'Adipose',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Muscle',
(int) 137 => 'Heart',
(int) 138 => 'Liver',
(int) 139 => 'Bladder',
(int) 140 => 'Breast',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Colon',
(int) 145 => 'Muscle',
(int) 146 => 'Brain',
(int) 147 => 'Breast',
(int) 148 => 'Liver',
(int) 149 => 'Lung',
(int) 150 => 'Muscle',
(int) 151 => 'Ovary',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Lung',
(int) 164 => 'Muscle',
(int) 165 => 'Ovary',
(int) 166 => 'Placenta',
(int) 167 => 'Testis',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Lung',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Heart',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Lung',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Bladder',
(int) 183 => 'Brain',
(int) 184 => 'Breast',
(int) 185 => 'Colon',
(int) 186 => 'Ovary',
(int) 187 => 'Testis',
(int) 188 => 'Adrenal',
(int) 189 => 'Bladder',
(int) 190 => 'Kidney',
(int) 191 => 'Ovary',
(int) 192 => 'Testis',
(int) 193 => 'Brain',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Liver',
(int) 197 => 'Muscle',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Brain',
(int) 201 => 'Brain',
(int) 202 => 'Colon',
(int) 203 => 'Liver',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Ovary',
(int) 207 => 'Placenta',
(int) 208 => 'Adipose',
(int) 209 => 'Brain',
(int) 210 => 'Breast',
(int) 211 => 'Colon',
(int) 212 => 'Heart',
(int) 213 => 'Lung',
(int) 214 => 'Ovary',
(int) 215 => 'Testis',
(int) 216 => 'Bladder',
(int) 217 => 'Brain',
(int) 218 => 'Colon',
(int) 219 => 'Heart',
(int) 220 => 'Kidney',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Testis',
(int) 224 => 'Colon',
(int) 225 => 'Testis',
(int) 226 => 'Adipose',
(int) 227 => 'Adrenal',
(int) 228 => 'Breast',
(int) 229 => 'Colon',
(int) 230 => 'Kidney',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Testis',
(int) 234 => 'Adipose',
(int) 235 => 'Adrenal',
(int) 236 => 'Brain',
(int) 237 => 'Breast',
(int) 238 => 'Colon',
(int) 239 => 'Heart',
(int) 240 => 'Kidney',
(int) 241 => 'Liver',
(int) 242 => 'Lung',
(int) 243 => 'Ovary',
(int) 244 => 'Testis',
(int) 245 => 'Breast',
(int) 246 => 'Liver',
(int) 247 => 'Lung',
(int) 248 => 'Brain',
(int) 249 => 'Heart',
(int) 250 => 'Ovary',
(int) 251 => 'Testis',
(int) 252 => 'Bladder',
(int) 253 => 'Brain',
(int) 254 => 'Breast',
(int) 255 => 'Heart',
(int) 256 => 'Kidney',
(int) 257 => 'Liver',
(int) 258 => 'Lung',
(int) 259 => 'Ovary',
(int) 260 => 'Testis',
(int) 261 => 'Adipose',
(int) 262 => 'Adrenal',
(int) 263 => 'Bladder',
(int) 264 => 'Brain',
(int) 265 => 'Breast',
(int) 266 => 'Colon',
(int) 267 => 'Heart',
(int) 268 => 'Kidney',
(int) 269 => 'Liver',
(int) 270 => 'Lung',
(int) 271 => 'Muscle',
(int) 272 => 'Ovary',
(int) 273 => 'Placenta',
(int) 274 => 'Testis',
(int) 275 => 'Adipose',
(int) 276 => 'Adrenal',
(int) 277 => 'Bladder',
(int) 278 => 'Brain',
(int) 279 => 'Breast',
(int) 280 => 'Heart',
(int) 281 => 'Liver',
(int) 282 => 'Lung',
(int) 283 => 'Ovary',
(int) 284 => 'Placenta',
(int) 285 => 'Testis'
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024420' => array(
[maximum depth reached]
),
'ENSMUSG00000036225' => array(
[maximum depth reached]
),
'ENSMUSG00000036743' => array(
[maximum depth reached]
),
'ENSMUSG00000037013' => array(
[maximum depth reached]
),
'ENSMUSG00000053740' => array(
[maximum depth reached]
),
'ENSMUSG00000054321' => array(
[maximum depth reached]
),
'ENSMUSG00000055795' => array(
[maximum depth reached]
),
'ENSMUSG00000071867' => array(
[maximum depth reached]
),
'ENSMUSG00000094306' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Liver',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Bladder',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Ovary',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Adipose',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Liver'
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
'ENSDARG00000097328' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000134504' => 'potassium channel tetramerization domain containing 1',
'ENSG00000141380' => 'synovial sarcoma translocation, chromosome 18',
'ENSG00000141384' => 'TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa',
'ENSG00000154611' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSG00000188985' => 'dihydrofolate reductase pseudogene 1',
'ENSG00000198795' => 'zinc finger protein 521',
'ENSG00000207160' => 'RNA, U6 small nuclear 1289, pseudogene',
'ENSG00000229248' => 'WW domain binding protein 2 pseudogene 1',
'ENSG00000242216' => 'RNA, 7SL, cytoplasmic 97, pseudogene',
'ENSG00000243925' => 'ribosomal protein S24 pseudogene 18',
'ENSG00000252846' => null,
'ENSG00000260372' => 'AQP4 antisense RNA 1',
'ENSG00000263553' => null,
'ENSG00000263829' => 'family with sequence similarity 60, member B pseudogene',
'ENSG00000263846' => 'cytokine induced apoptosis inhibitor 1 pseudogene',
'ENSG00000263862' => 'long intergenic non-protein coding RNA 1543',
'ENSG00000264193' => null,
'ENSG00000264345' => null,
'ENSG00000264434' => null,
'ENSG00000264911' => null,
'ENSG00000265485' => null,
'ENSG00000265552' => null,
'ENSG00000266227' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2',
'ENSG00000266237' => null,
'ENSG00000266520' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 1',
'ENSG00000266573' => null,
'ENSG00000266809' => null,
'ENSG00000275805' => null,
'ENSG00000276221' => 'microRNA 8057',
'ENSG00000277534' => null,
'ENSG00000279439' => null,
'ENSMUSG00000024420' => 'zinc finger protein 521',
'ENSMUSG00000036225' => 'potassium channel tetramerisation domain containing 1',
'ENSMUSG00000036743' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSMUSG00000037013' => 'synovial sarcoma translocation, Chromosome 18',
'ENSMUSG00000053740' => 'predicted pseudogene 6457',
'ENSMUSG00000054321' => 'TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor',
'ENSMUSG00000055795' => 'predicted gene 5160',
'ENSMUSG00000071867' => 'predicted gene 6304',
'ENSMUSG00000094306' => 'predicted gene, 24924',
'ENSMUSG00000096288' => 'predicted gene, 22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
)
$gene_name_arr = array(
'ENSG00000134504' => 'KCTD1',
'ENSG00000141380' => 'SS18',
'ENSG00000141384' => 'TAF4B',
'ENSG00000154611' => 'PSMA8',
'ENSG00000188985' => 'DHFRP1',
'ENSG00000198795' => 'ZNF521',
'ENSG00000207160' => 'RNU6-1289P',
'ENSG00000229248' => 'WBP2P1',
'ENSG00000242216' => 'RN7SL97P',
'ENSG00000243925' => 'RPS24P18',
'ENSG00000252846' => 'AC090206.1',
'ENSG00000260372' => 'AQP4-AS1',
'ENSG00000263553' => 'RP11-449D8.2',
'ENSG00000263829' => 'FAM60BP',
'ENSG00000263846' => 'CIAPIN1P',
'ENSG00000263862' => 'RP11-107K17.1',
'ENSG00000264193' => 'RP11-737G21.1',
'ENSG00000264345' => 'RP11-958F21.1',
'ENSG00000264434' => 'CTD-2006O16.2',
'ENSG00000264911' => 'RP11-107K17.2',
'ENSG00000265485' => 'RP11-449D8.1',
'ENSG00000265552' => 'RP11-958F21.3',
'ENSG00000266227' => 'NPM1P2',
'ENSG00000266237' => 'RP11-25D3.1',
'ENSG00000266520' => 'RAC1P1',
'ENSG00000266573' => 'RP11-449D8.5',
'ENSG00000266809' => 'RP11-449D8.3',
'ENSG00000275805' => 'RP11-349H17.2',
'ENSG00000276221' => 'MIR8057',
'ENSG00000277534' => 'RP11-9E17.1',
'ENSG00000279439' => 'CTD-2576N18.1',
'ENSMUSG00000024420' => 'Zfp521',
'ENSMUSG00000036225' => 'Kctd1',
'ENSMUSG00000036743' => 'Psma8',
'ENSMUSG00000037013' => 'Ss18',
'ENSMUSG00000053740' => 'Gm6457',
'ENSMUSG00000054321' => 'Taf4b',
'ENSMUSG00000055795' => 'Gm5160',
'ENSMUSG00000071867' => 'Gm6304',
'ENSMUSG00000094306' => 'Gm24924',
'ENSMUSG00000096288' => 'Gm22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0001',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '24628254',
'seq_end' => '26687255',
'region_length' => '2059001',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0002',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '13186157',
'seq_end' => '15176263',
'region_length' => '1990106',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '2277465',
'seq_end' => '2351484',
'region_length' => '74019',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '18251540',
'seq_end' => '18251797',
'region_length' => '257',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 67 => 'Brain',
(int) 106 => 'Breast',
(int) 141 => 'Colon',
(int) 167 => 'Heart',
(int) 200 => 'Kidney',
(int) 223 => 'Liver',
(int) 252 => 'Lung',
(int) 279 => 'Muscle',
(int) 302 => 'Ovary',
(int) 347 => 'Placenta',
(int) 373 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 107
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000317932' => array(
'start' => '26454913',
'end' => '26629242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-201'
),
'ENST00000408011' => array(
'start' => '26454974',
'end' => '26549435',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-003'
),
'ENST00000417602' => array(
'start' => '26454913',
'end' => '26549814',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-202'
),
'ENST00000577255' => array(
'start' => '26455713',
'end' => '26476891',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD1-004'
),
'ENST00000578973' => array(
'start' => '26459789',
'end' => '26546999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-006'
),
'ENST00000579973' => array(
'start' => '26454910',
'end' => '26640344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-001'
),
'ENST00000580059' => array(
'start' => '26455498',
'end' => '26547118',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-005'
),
'ENST00000580191' => array(
'start' => '26455760',
'end' => '26657401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-009'
),
'ENST00000580638' => array(
'start' => '26455892',
'end' => '26549819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-002'
),
'ENST00000582494' => array(
'start' => '26455770',
'end' => '26460876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-007'
),
'ENST00000584630' => array(
'start' => '26581162',
'end' => '26657394',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-008'
),
'ENST00000269137' => array(
'start' => '26018014',
'end' => '26090901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-001'
),
'ENST00000269138' => array(
'start' => '26018007',
'end' => '26090598',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-007'
),
'ENST00000415083' => array(
'start' => '26016253',
'end' => '26090625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-003'
),
'ENST00000539244' => array(
'start' => '26035091',
'end' => '26090613',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-006'
),
'ENST00000542420' => array(
'start' => '26017343',
'end' => '26091217',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-002'
),
'ENST00000577572' => array(
'start' => '26057699',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-011'
),
'ENST00000577636' => array(
'start' => '26052743',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-026'
),
'ENST00000577751' => array(
'start' => '26064832',
'end' => '26090135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-008'
),
'ENST00000578595' => array(
'start' => '26080371',
'end' => '26090100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-021'
),
'ENST00000578700' => array(
'start' => '26052823',
'end' => '26091216',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-010'
),
'ENST00000578954' => array(
'start' => '26052682',
'end' => '26090652',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-014'
),
'ENST00000579061' => array(
'start' => '26052705',
'end' => '26091192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-024'
),
'ENST00000579640' => array(
'start' => '26017885',
'end' => '26090610',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-004'
),
'ENST00000580003' => array(
'start' => '26068260',
'end' => '26078386',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-012'
),
'ENST00000580642' => array(
'start' => '26078103',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-019'
),
'ENST00000580751' => array(
'start' => '26078076',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-018'
),
'ENST00000580958' => array(
'start' => '26018350',
'end' => '26035614',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-013'
),
'ENST00000581021' => array(
'start' => '26057695',
'end' => '26090135',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-022'
),
'ENST00000581570' => array(
'start' => '26057732',
'end' => '26090608',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-016'
),
'ENST00000582092' => array(
'start' => '26023613',
'end' => '26035065',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-027'
),
'ENST00000582448' => array(
'start' => '26057719',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-009'
),
'ENST00000582792' => array(
'start' => '26057612',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-017'
),
'ENST00000583595' => array(
'start' => '26082383',
'end' => '26086027',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-015'
),
'ENST00000584083' => array(
'start' => '26052771',
'end' => '26090096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-023'
),
'ENST00000585121' => array(
'start' => '26018120',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-005'
),
'ENST00000585241' => array(
'start' => '26039410',
'end' => '26090625',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-025'
),
'ENST00000269142' => array(
'start' => '26225936',
'end' => '26391685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-002'
),
'ENST00000400466' => array(
'start' => '26226445',
'end' => '26391678',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-201'
),
'ENST00000418698' => array(
'start' => '26226883',
'end' => '26391683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAF4B-003'
),
'ENST00000578121' => array(
'start' => '26226486',
'end' => '26390164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-001'
),
'ENST00000308268' => array(
'start' => '26133877',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-001'
),
'ENST00000343848' => array(
'start' => '26133874',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-003'
),
'ENST00000415576' => array(
'start' => '26133852',
'end' => '26192824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-002'
),
'ENST00000538664' => array(
'start' => '26133852',
'end' => '26193355',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PSMA8-004'
),
'ENST00000612461' => array(
'start' => '26140086',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-201'
),
'ENST00000579682' => array(
'start' => '26170726',
'end' => '26171284',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'DHFRP1-001'
),
'ENST00000361524' => array(
'start' => '25061926',
'end' => '25352152',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-001'
),
'ENST00000399425' => array(
'start' => '25062451',
'end' => '25352071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZNF521-004'
),
'ENST00000538137' => array(
'start' => '25062593',
'end' => '25352155',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-002'
),
'ENST00000577461' => array(
'start' => '25322137',
'end' => '25351193',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-009'
),
'ENST00000577720' => array(
'start' => '25227203',
'end' => '25231530',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-012'
),
'ENST00000577775' => array(
'start' => '25136718',
'end' => '25224789',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-013'
),
'ENST00000577801' => array(
'start' => '25227244',
'end' => '25351747',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-010'
),
'ENST00000579111' => array(
'start' => '25227607',
'end' => '25352190',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-005'
),
'ENST00000580488' => array(
'start' => '25227486',
'end' => '25351615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-008'
),
'ENST00000581869' => array(
'start' => '25227388',
'end' => '25302034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-014'
),
'ENST00000582584' => array(
'start' => '25315524',
'end' => '25352149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-007'
),
'ENST00000583005' => array(
'start' => '25227587',
'end' => '25352170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-006'
),
'ENST00000583398' => array(
'start' => '25227620',
'end' => '25322335',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZNF521-011'
),
'ENST00000584787' => array(
'start' => '25062425',
'end' => '25352148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-003'
),
'ENST00000384431' => array(
'start' => '26366301',
'end' => '26366406',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1289P-201'
),
'ENST00000427605' => array(
'start' => '25016434',
'end' => '25017204',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'WBP2P1-001'
),
'ENST00000486780' => array(
'start' => '25818234',
'end' => '25818532',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL97P-201'
),
'ENST00000468051' => array(
'start' => '26098839',
'end' => '26099226',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS24P18-001'
),
'ENST00000517037' => array(
'start' => '26586714',
'end' => '26586798',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC090206.1-201'
),
'ENST00000568797' => array(
'start' => '26865308',
'end' => '26935946',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-001'
),
'ENST00000578701' => array(
'start' => '26865307',
'end' => '27190698',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-003'
),
'ENST00000579964' => array(
'start' => '26655743',
'end' => '26933085',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-004'
),
'ENST00000582605' => array(
'start' => '26655742',
'end' => '26930757',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-002'
),
'ENST00000578490' => array(
'start' => '24673163',
'end' => '24674348',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.2-001'
),
'ENST00000578364' => array(
'start' => '26255698',
'end' => '26256355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FAM60BP-001'
),
'ENST00000584883' => array(
'start' => '26599408',
'end' => '26600338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CIAPIN1P-001'
),
'ENST00000578367' => array(
'start' => '26422995',
'end' => '26426101',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-107K17.1-001'
),
'ENST00000583887' => array(
'start' => '25953216',
'end' => '25953468',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-737G21.1-001'
),
'ENST00000580984' => array(
'start' => '24933487',
'end' => '24987682',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-002'
),
'ENST00000582697' => array(
'start' => '24954207',
'end' => '24987665',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-001'
),
'ENST00000580645' => array(
'start' => '25302126',
'end' => '25302960',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2006O16.2-001'
),
'ENST00000582910' => array(
'start' => '26348347',
'end' => '26349004',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-107K17.2-001'
),
'ENST00000577994' => array(
'start' => '24628182',
'end' => '24662198',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-001'
),
'ENST00000583558' => array(
'start' => '24656993',
'end' => '24660405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-002'
),
'ENST00000578129' => array(
'start' => '25055600',
'end' => '25056760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.3-001'
),
'ENST00000578162' => array(
'start' => '26204869',
'end' => '26205904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P2-001'
),
'ENST00000580975' => array(
'start' => '26266009',
'end' => '26267409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-25D3.1-001'
),
'ENST00000578535' => array(
'start' => '24685772',
'end' => '24686351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P1-001'
),
'ENST00000577354' => array(
'start' => '24725781',
'end' => '24766645',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-001'
),
'ENST00000582650' => array(
'start' => '24725853',
'end' => '24929076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-002'
),
'ENST00000583794' => array(
'start' => '24725944',
'end' => '24744878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-003'
),
'ENST00000579571' => array(
'start' => '24689914',
'end' => '24690161',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-449D8.3-001'
),
'ENST00000615734' => array(
'start' => '26565723',
'end' => '26575626',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-349H17.2-001'
),
'ENST00000620957' => array(
'start' => '26591467',
'end' => '26591535',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8057-201'
),
'ENST00000620414' => array(
'start' => '26542971',
'end' => '26545791',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-9E17.1-001'
),
'ENST00000624795' => array(
'start' => '25200976',
'end' => '25202837',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2576N18.1-001'
),
'ENSMUST00000025288' => array(
'start' => '13687013',
'end' => '13972733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp521-201'
),
'ENSMUST00000025992' => array(
'start' => '14968685',
'end' => '15151446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-201'
),
'ENSMUST00000168989' => array(
'start' => '14968685',
'end' => '15063582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-202'
),
'ENSMUST00000040860' => array(
'start' => '14706151',
'end' => '14762299',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psma8-201'
),
'ENSMUST00000040924' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-201'
),
'ENSMUST00000040964' => array(
'start' => '14624198',
'end' => '14682766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-202'
),
'ENSMUST00000092041' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-203'
),
'ENSMUST00000066378' => array(
'start' => '14570101',
'end' => '14570915',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6457-201'
),
'ENSMUST00000169862' => array(
'start' => '14783245',
'end' => '14900359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taf4b-201'
),
'ENSMUST00000069552' => array(
'start' => '14424868',
'end' => '14425311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5160-201'
),
'ENSMUST00000096579' => array(
'start' => '15011246',
'end' => '15011692',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6304-201'
),
'ENSMUST00000084007' => array(
'start' => '14647767',
'end' => '14647930',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24924-201'
),
'ENSMUST00000083216' => array(
'start' => '13209702',
'end' => '13209808',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22251-201'
),
'ENSDART00000156951' => array(
'start' => '2335096',
'end' => '2351472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-305a18.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
'ENSG00000141380' => array(
[maximum depth reached]
),
'ENSG00000141384' => array(
[maximum depth reached]
),
'ENSG00000154611' => array(
[maximum depth reached]
),
'ENSG00000188985' => array(
[maximum depth reached]
),
'ENSG00000198795' => array(
[maximum depth reached]
),
'ENSG00000207160' => array(
[maximum depth reached]
),
'ENSG00000243925' => array(
[maximum depth reached]
),
'ENSG00000260372' => array(
[maximum depth reached]
),
'ENSG00000263553' => array(
[maximum depth reached]
),
'ENSG00000263829' => array(
[maximum depth reached]
),
'ENSG00000263846' => array(
[maximum depth reached]
),
'ENSG00000263862' => array(
[maximum depth reached]
),
'ENSG00000264345' => array(
[maximum depth reached]
),
'ENSG00000264434' => array(
[maximum depth reached]
),
'ENSG00000264911' => array(
[maximum depth reached]
),
'ENSG00000265485' => array(
[maximum depth reached]
),
'ENSG00000265552' => array(
[maximum depth reached]
),
'ENSG00000266227' => array(
[maximum depth reached]
),
'ENSG00000266237' => array(
[maximum depth reached]
),
'ENSG00000266520' => array(
[maximum depth reached]
),
'ENSG00000266573' => array(
[maximum depth reached]
),
'ENSG00000275805' => array(
[maximum depth reached]
),
'ENSG00000277534' => array(
[maximum depth reached]
),
'ENSG00000279439' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Kidney',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Bladder',
(int) 52 => 'Breast',
(int) 53 => 'Heart',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Breast',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Heart',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Testis',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Ovary',
(int) 127 => 'Adipose',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Muscle',
(int) 137 => 'Heart',
(int) 138 => 'Liver',
(int) 139 => 'Bladder',
(int) 140 => 'Breast',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Colon',
(int) 145 => 'Muscle',
(int) 146 => 'Brain',
(int) 147 => 'Breast',
(int) 148 => 'Liver',
(int) 149 => 'Lung',
(int) 150 => 'Muscle',
(int) 151 => 'Ovary',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Lung',
(int) 164 => 'Muscle',
(int) 165 => 'Ovary',
(int) 166 => 'Placenta',
(int) 167 => 'Testis',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Lung',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Heart',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Lung',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Bladder',
(int) 183 => 'Brain',
(int) 184 => 'Breast',
(int) 185 => 'Colon',
(int) 186 => 'Ovary',
(int) 187 => 'Testis',
(int) 188 => 'Adrenal',
(int) 189 => 'Bladder',
(int) 190 => 'Kidney',
(int) 191 => 'Ovary',
(int) 192 => 'Testis',
(int) 193 => 'Brain',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Liver',
(int) 197 => 'Muscle',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Brain',
(int) 201 => 'Brain',
(int) 202 => 'Colon',
(int) 203 => 'Liver',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Ovary',
(int) 207 => 'Placenta',
(int) 208 => 'Adipose',
(int) 209 => 'Brain',
(int) 210 => 'Breast',
(int) 211 => 'Colon',
(int) 212 => 'Heart',
(int) 213 => 'Lung',
(int) 214 => 'Ovary',
(int) 215 => 'Testis',
(int) 216 => 'Bladder',
(int) 217 => 'Brain',
(int) 218 => 'Colon',
(int) 219 => 'Heart',
(int) 220 => 'Kidney',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Testis',
(int) 224 => 'Colon',
(int) 225 => 'Testis',
(int) 226 => 'Adipose',
(int) 227 => 'Adrenal',
(int) 228 => 'Breast',
(int) 229 => 'Colon',
(int) 230 => 'Kidney',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Testis',
(int) 234 => 'Adipose',
(int) 235 => 'Adrenal',
(int) 236 => 'Brain',
(int) 237 => 'Breast',
(int) 238 => 'Colon',
(int) 239 => 'Heart',
(int) 240 => 'Kidney',
(int) 241 => 'Liver',
(int) 242 => 'Lung',
(int) 243 => 'Ovary',
(int) 244 => 'Testis',
(int) 245 => 'Breast',
(int) 246 => 'Liver',
(int) 247 => 'Lung',
(int) 248 => 'Brain',
(int) 249 => 'Heart',
(int) 250 => 'Ovary',
(int) 251 => 'Testis',
(int) 252 => 'Bladder',
(int) 253 => 'Brain',
(int) 254 => 'Breast',
(int) 255 => 'Heart',
(int) 256 => 'Kidney',
(int) 257 => 'Liver',
(int) 258 => 'Lung',
(int) 259 => 'Ovary',
(int) 260 => 'Testis',
(int) 261 => 'Adipose',
(int) 262 => 'Adrenal',
(int) 263 => 'Bladder',
(int) 264 => 'Brain',
(int) 265 => 'Breast',
(int) 266 => 'Colon',
(int) 267 => 'Heart',
(int) 268 => 'Kidney',
(int) 269 => 'Liver',
(int) 270 => 'Lung',
(int) 271 => 'Muscle',
(int) 272 => 'Ovary',
(int) 273 => 'Placenta',
(int) 274 => 'Testis',
(int) 275 => 'Adipose',
(int) 276 => 'Adrenal',
(int) 277 => 'Bladder',
(int) 278 => 'Brain',
(int) 279 => 'Breast',
(int) 280 => 'Heart',
(int) 281 => 'Liver',
(int) 282 => 'Lung',
(int) 283 => 'Ovary',
(int) 284 => 'Placenta',
(int) 285 => 'Testis'
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024420' => array(
[maximum depth reached]
),
'ENSMUSG00000036225' => array(
[maximum depth reached]
),
'ENSMUSG00000036743' => array(
[maximum depth reached]
),
'ENSMUSG00000037013' => array(
[maximum depth reached]
),
'ENSMUSG00000053740' => array(
[maximum depth reached]
),
'ENSMUSG00000054321' => array(
[maximum depth reached]
),
'ENSMUSG00000055795' => array(
[maximum depth reached]
),
'ENSMUSG00000071867' => array(
[maximum depth reached]
),
'ENSMUSG00000094306' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Liver',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Bladder',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Ovary',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Adipose',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Liver'
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
'ENSDARG00000097328' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '18251540',
'seq_end' => '18251797',
'region_length' => '257',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
)
$gene_el = array(
'ENSDART00000156951' => array(
'Brain' => array(
'average_FPKM' => '38.948',
'stddev_FPKM' => '27.19'
),
'Heart' => array(
'average_FPKM' => '3.924',
'stddev_FPKM' => '3.51'
),
'Muscle' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000097328'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '38.948',
'stddev_FPKM' => '27.19'
),
'Heart' => array(
'average_FPKM' => '3.924',
'stddev_FPKM' => '3.51'
),
'Muscle' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000156951'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000134504' => 'potassium channel tetramerization domain containing 1',
'ENSG00000141380' => 'synovial sarcoma translocation, chromosome 18',
'ENSG00000141384' => 'TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa',
'ENSG00000154611' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSG00000188985' => 'dihydrofolate reductase pseudogene 1',
'ENSG00000198795' => 'zinc finger protein 521',
'ENSG00000207160' => 'RNA, U6 small nuclear 1289, pseudogene',
'ENSG00000229248' => 'WW domain binding protein 2 pseudogene 1',
'ENSG00000242216' => 'RNA, 7SL, cytoplasmic 97, pseudogene',
'ENSG00000243925' => 'ribosomal protein S24 pseudogene 18',
'ENSG00000252846' => null,
'ENSG00000260372' => 'AQP4 antisense RNA 1',
'ENSG00000263553' => null,
'ENSG00000263829' => 'family with sequence similarity 60, member B pseudogene',
'ENSG00000263846' => 'cytokine induced apoptosis inhibitor 1 pseudogene',
'ENSG00000263862' => 'long intergenic non-protein coding RNA 1543',
'ENSG00000264193' => null,
'ENSG00000264345' => null,
'ENSG00000264434' => null,
'ENSG00000264911' => null,
'ENSG00000265485' => null,
'ENSG00000265552' => null,
'ENSG00000266227' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2',
'ENSG00000266237' => null,
'ENSG00000266520' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 1',
'ENSG00000266573' => null,
'ENSG00000266809' => null,
'ENSG00000275805' => null,
'ENSG00000276221' => 'microRNA 8057',
'ENSG00000277534' => null,
'ENSG00000279439' => null,
'ENSMUSG00000024420' => 'zinc finger protein 521',
'ENSMUSG00000036225' => 'potassium channel tetramerisation domain containing 1',
'ENSMUSG00000036743' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSMUSG00000037013' => 'synovial sarcoma translocation, Chromosome 18',
'ENSMUSG00000053740' => 'predicted pseudogene 6457',
'ENSMUSG00000054321' => 'TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor',
'ENSMUSG00000055795' => 'predicted gene 5160',
'ENSMUSG00000071867' => 'predicted gene 6304',
'ENSMUSG00000094306' => 'predicted gene, 24924',
'ENSMUSG00000096288' => 'predicted gene, 22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
),
'gene_name_arr' => array(
'ENSG00000134504' => 'KCTD1',
'ENSG00000141380' => 'SS18',
'ENSG00000141384' => 'TAF4B',
'ENSG00000154611' => 'PSMA8',
'ENSG00000188985' => 'DHFRP1',
'ENSG00000198795' => 'ZNF521',
'ENSG00000207160' => 'RNU6-1289P',
'ENSG00000229248' => 'WBP2P1',
'ENSG00000242216' => 'RN7SL97P',
'ENSG00000243925' => 'RPS24P18',
'ENSG00000252846' => 'AC090206.1',
'ENSG00000260372' => 'AQP4-AS1',
'ENSG00000263553' => 'RP11-449D8.2',
'ENSG00000263829' => 'FAM60BP',
'ENSG00000263846' => 'CIAPIN1P',
'ENSG00000263862' => 'RP11-107K17.1',
'ENSG00000264193' => 'RP11-737G21.1',
'ENSG00000264345' => 'RP11-958F21.1',
'ENSG00000264434' => 'CTD-2006O16.2',
'ENSG00000264911' => 'RP11-107K17.2',
'ENSG00000265485' => 'RP11-449D8.1',
'ENSG00000265552' => 'RP11-958F21.3',
'ENSG00000266227' => 'NPM1P2',
'ENSG00000266237' => 'RP11-25D3.1',
'ENSG00000266520' => 'RAC1P1',
'ENSG00000266573' => 'RP11-449D8.5',
'ENSG00000266809' => 'RP11-449D8.3',
'ENSG00000275805' => 'RP11-349H17.2',
'ENSG00000276221' => 'MIR8057',
'ENSG00000277534' => 'RP11-9E17.1',
'ENSG00000279439' => 'CTD-2576N18.1',
'ENSMUSG00000024420' => 'Zfp521',
'ENSMUSG00000036225' => 'Kctd1',
'ENSMUSG00000036743' => 'Psma8',
'ENSMUSG00000037013' => 'Ss18',
'ENSMUSG00000053740' => 'Gm6457',
'ENSMUSG00000054321' => 'Taf4b',
'ENSMUSG00000055795' => 'Gm5160',
'ENSMUSG00000071867' => 'Gm6304',
'ENSMUSG00000094306' => 'Gm24924',
'ENSMUSG00000096288' => 'Gm22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 67 => 'Brain',
(int) 106 => 'Breast',
(int) 141 => 'Colon',
(int) 167 => 'Heart',
(int) 200 => 'Kidney',
(int) 223 => 'Liver',
(int) 252 => 'Lung',
(int) 279 => 'Muscle',
(int) 302 => 'Ovary',
(int) 347 => 'Placenta',
(int) 373 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 107,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000317932' => array(
'start' => '26454913',
'end' => '26629242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-201'
),
'ENST00000408011' => array(
'start' => '26454974',
'end' => '26549435',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-003'
),
'ENST00000417602' => array(
'start' => '26454913',
'end' => '26549814',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-202'
),
'ENST00000577255' => array(
'start' => '26455713',
'end' => '26476891',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD1-004'
),
'ENST00000578973' => array(
'start' => '26459789',
'end' => '26546999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-006'
),
'ENST00000579973' => array(
'start' => '26454910',
'end' => '26640344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-001'
),
'ENST00000580059' => array(
'start' => '26455498',
'end' => '26547118',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-005'
),
'ENST00000580191' => array(
'start' => '26455760',
'end' => '26657401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-009'
),
'ENST00000580638' => array(
'start' => '26455892',
'end' => '26549819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-002'
),
'ENST00000582494' => array(
'start' => '26455770',
'end' => '26460876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-007'
),
'ENST00000584630' => array(
'start' => '26581162',
'end' => '26657394',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-008'
),
'ENST00000269137' => array(
'start' => '26018014',
'end' => '26090901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-001'
),
'ENST00000269138' => array(
'start' => '26018007',
'end' => '26090598',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-007'
),
'ENST00000415083' => array(
'start' => '26016253',
'end' => '26090625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-003'
),
'ENST00000539244' => array(
'start' => '26035091',
'end' => '26090613',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-006'
),
'ENST00000542420' => array(
'start' => '26017343',
'end' => '26091217',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-002'
),
'ENST00000577572' => array(
'start' => '26057699',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-011'
),
'ENST00000577636' => array(
'start' => '26052743',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-026'
),
'ENST00000577751' => array(
'start' => '26064832',
'end' => '26090135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-008'
),
'ENST00000578595' => array(
'start' => '26080371',
'end' => '26090100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-021'
),
'ENST00000578700' => array(
'start' => '26052823',
'end' => '26091216',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-010'
),
'ENST00000578954' => array(
'start' => '26052682',
'end' => '26090652',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-014'
),
'ENST00000579061' => array(
'start' => '26052705',
'end' => '26091192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-024'
),
'ENST00000579640' => array(
'start' => '26017885',
'end' => '26090610',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-004'
),
'ENST00000580003' => array(
'start' => '26068260',
'end' => '26078386',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-012'
),
'ENST00000580642' => array(
'start' => '26078103',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-019'
),
'ENST00000580751' => array(
'start' => '26078076',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-018'
),
'ENST00000580958' => array(
'start' => '26018350',
'end' => '26035614',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-013'
),
'ENST00000581021' => array(
'start' => '26057695',
'end' => '26090135',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-022'
),
'ENST00000581570' => array(
'start' => '26057732',
'end' => '26090608',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-016'
),
'ENST00000582092' => array(
'start' => '26023613',
'end' => '26035065',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-027'
),
'ENST00000582448' => array(
'start' => '26057719',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-009'
),
'ENST00000582792' => array(
'start' => '26057612',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-017'
),
'ENST00000583595' => array(
'start' => '26082383',
'end' => '26086027',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-015'
),
'ENST00000584083' => array(
'start' => '26052771',
'end' => '26090096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-023'
),
'ENST00000585121' => array(
'start' => '26018120',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-005'
),
'ENST00000585241' => array(
'start' => '26039410',
'end' => '26090625',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-025'
),
'ENST00000269142' => array(
'start' => '26225936',
'end' => '26391685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-002'
),
'ENST00000400466' => array(
'start' => '26226445',
'end' => '26391678',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-201'
),
'ENST00000418698' => array(
'start' => '26226883',
'end' => '26391683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAF4B-003'
),
'ENST00000578121' => array(
'start' => '26226486',
'end' => '26390164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-001'
),
'ENST00000308268' => array(
'start' => '26133877',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-001'
),
'ENST00000343848' => array(
'start' => '26133874',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-003'
),
'ENST00000415576' => array(
'start' => '26133852',
'end' => '26192824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-002'
),
'ENST00000538664' => array(
'start' => '26133852',
'end' => '26193355',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PSMA8-004'
),
'ENST00000612461' => array(
'start' => '26140086',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-201'
),
'ENST00000579682' => array(
'start' => '26170726',
'end' => '26171284',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'DHFRP1-001'
),
'ENST00000361524' => array(
'start' => '25061926',
'end' => '25352152',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-001'
),
'ENST00000399425' => array(
'start' => '25062451',
'end' => '25352071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZNF521-004'
),
'ENST00000538137' => array(
'start' => '25062593',
'end' => '25352155',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-002'
),
'ENST00000577461' => array(
'start' => '25322137',
'end' => '25351193',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-009'
),
'ENST00000577720' => array(
'start' => '25227203',
'end' => '25231530',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-012'
),
'ENST00000577775' => array(
'start' => '25136718',
'end' => '25224789',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-013'
),
'ENST00000577801' => array(
'start' => '25227244',
'end' => '25351747',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-010'
),
'ENST00000579111' => array(
'start' => '25227607',
'end' => '25352190',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-005'
),
'ENST00000580488' => array(
'start' => '25227486',
'end' => '25351615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-008'
),
'ENST00000581869' => array(
'start' => '25227388',
'end' => '25302034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-014'
),
'ENST00000582584' => array(
'start' => '25315524',
'end' => '25352149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-007'
),
'ENST00000583005' => array(
'start' => '25227587',
'end' => '25352170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-006'
),
'ENST00000583398' => array(
'start' => '25227620',
'end' => '25322335',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZNF521-011'
),
'ENST00000584787' => array(
'start' => '25062425',
'end' => '25352148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-003'
),
'ENST00000384431' => array(
'start' => '26366301',
'end' => '26366406',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1289P-201'
),
'ENST00000427605' => array(
'start' => '25016434',
'end' => '25017204',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'WBP2P1-001'
),
'ENST00000486780' => array(
'start' => '25818234',
'end' => '25818532',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL97P-201'
),
'ENST00000468051' => array(
'start' => '26098839',
'end' => '26099226',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS24P18-001'
),
'ENST00000517037' => array(
'start' => '26586714',
'end' => '26586798',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC090206.1-201'
),
'ENST00000568797' => array(
'start' => '26865308',
'end' => '26935946',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-001'
),
'ENST00000578701' => array(
'start' => '26865307',
'end' => '27190698',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-003'
),
'ENST00000579964' => array(
'start' => '26655743',
'end' => '26933085',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-004'
),
'ENST00000582605' => array(
'start' => '26655742',
'end' => '26930757',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-002'
),
'ENST00000578490' => array(
'start' => '24673163',
'end' => '24674348',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.2-001'
),
'ENST00000578364' => array(
'start' => '26255698',
'end' => '26256355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FAM60BP-001'
),
'ENST00000584883' => array(
'start' => '26599408',
'end' => '26600338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CIAPIN1P-001'
),
'ENST00000578367' => array(
'start' => '26422995',
'end' => '26426101',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-107K17.1-001'
),
'ENST00000583887' => array(
'start' => '25953216',
'end' => '25953468',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-737G21.1-001'
),
'ENST00000580984' => array(
'start' => '24933487',
'end' => '24987682',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-002'
),
'ENST00000582697' => array(
'start' => '24954207',
'end' => '24987665',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-001'
),
'ENST00000580645' => array(
'start' => '25302126',
'end' => '25302960',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2006O16.2-001'
),
'ENST00000582910' => array(
'start' => '26348347',
'end' => '26349004',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-107K17.2-001'
),
'ENST00000577994' => array(
'start' => '24628182',
'end' => '24662198',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-001'
),
'ENST00000583558' => array(
'start' => '24656993',
'end' => '24660405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-002'
),
'ENST00000578129' => array(
'start' => '25055600',
'end' => '25056760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.3-001'
),
'ENST00000578162' => array(
'start' => '26204869',
'end' => '26205904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P2-001'
),
'ENST00000580975' => array(
'start' => '26266009',
'end' => '26267409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-25D3.1-001'
),
'ENST00000578535' => array(
'start' => '24685772',
'end' => '24686351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P1-001'
),
'ENST00000577354' => array(
'start' => '24725781',
'end' => '24766645',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-001'
),
'ENST00000582650' => array(
'start' => '24725853',
'end' => '24929076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-002'
),
'ENST00000583794' => array(
'start' => '24725944',
'end' => '24744878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-003'
),
'ENST00000579571' => array(
'start' => '24689914',
'end' => '24690161',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-449D8.3-001'
),
'ENST00000615734' => array(
'start' => '26565723',
'end' => '26575626',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-349H17.2-001'
),
'ENST00000620957' => array(
'start' => '26591467',
'end' => '26591535',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8057-201'
),
'ENST00000620414' => array(
'start' => '26542971',
'end' => '26545791',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-9E17.1-001'
),
'ENST00000624795' => array(
'start' => '25200976',
'end' => '25202837',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2576N18.1-001'
),
'ENSMUST00000025288' => array(
'start' => '13687013',
'end' => '13972733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp521-201'
),
'ENSMUST00000025992' => array(
'start' => '14968685',
'end' => '15151446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-201'
),
'ENSMUST00000168989' => array(
'start' => '14968685',
'end' => '15063582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-202'
),
'ENSMUST00000040860' => array(
'start' => '14706151',
'end' => '14762299',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psma8-201'
),
'ENSMUST00000040924' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-201'
),
'ENSMUST00000040964' => array(
'start' => '14624198',
'end' => '14682766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-202'
),
'ENSMUST00000092041' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-203'
),
'ENSMUST00000066378' => array(
'start' => '14570101',
'end' => '14570915',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6457-201'
),
'ENSMUST00000169862' => array(
'start' => '14783245',
'end' => '14900359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taf4b-201'
),
'ENSMUST00000069552' => array(
'start' => '14424868',
'end' => '14425311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5160-201'
),
'ENSMUST00000096579' => array(
'start' => '15011246',
'end' => '15011692',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6304-201'
),
'ENSMUST00000084007' => array(
'start' => '14647767',
'end' => '14647930',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24924-201'
),
'ENSMUST00000083216' => array(
'start' => '13209702',
'end' => '13209808',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22251-201'
),
'ENSDART00000156951' => array(
'start' => '2335096',
'end' => '2351472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-305a18.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
'ENSG00000141380' => array(
[maximum depth reached]
),
'ENSG00000141384' => array(
[maximum depth reached]
),
'ENSG00000154611' => array(
[maximum depth reached]
),
'ENSG00000188985' => array(
[maximum depth reached]
),
'ENSG00000198795' => array(
[maximum depth reached]
),
'ENSG00000207160' => array(
[maximum depth reached]
),
'ENSG00000243925' => array(
[maximum depth reached]
),
'ENSG00000260372' => array(
[maximum depth reached]
),
'ENSG00000263553' => array(
[maximum depth reached]
),
'ENSG00000263829' => array(
[maximum depth reached]
),
'ENSG00000263846' => array(
[maximum depth reached]
),
'ENSG00000263862' => array(
[maximum depth reached]
),
'ENSG00000264345' => array(
[maximum depth reached]
),
'ENSG00000264434' => array(
[maximum depth reached]
),
'ENSG00000264911' => array(
[maximum depth reached]
),
'ENSG00000265485' => array(
[maximum depth reached]
),
'ENSG00000265552' => array(
[maximum depth reached]
),
'ENSG00000266227' => array(
[maximum depth reached]
),
'ENSG00000266237' => array(
[maximum depth reached]
),
'ENSG00000266520' => array(
[maximum depth reached]
),
'ENSG00000266573' => array(
[maximum depth reached]
),
'ENSG00000275805' => array(
[maximum depth reached]
),
'ENSG00000277534' => array(
[maximum depth reached]
),
'ENSG00000279439' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Kidney',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Bladder',
(int) 52 => 'Breast',
(int) 53 => 'Heart',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Breast',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Heart',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Testis',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Ovary',
(int) 127 => 'Adipose',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Muscle',
(int) 137 => 'Heart',
(int) 138 => 'Liver',
(int) 139 => 'Bladder',
(int) 140 => 'Breast',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Colon',
(int) 145 => 'Muscle',
(int) 146 => 'Brain',
(int) 147 => 'Breast',
(int) 148 => 'Liver',
(int) 149 => 'Lung',
(int) 150 => 'Muscle',
(int) 151 => 'Ovary',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Lung',
(int) 164 => 'Muscle',
(int) 165 => 'Ovary',
(int) 166 => 'Placenta',
(int) 167 => 'Testis',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Lung',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Heart',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Lung',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Bladder',
(int) 183 => 'Brain',
(int) 184 => 'Breast',
(int) 185 => 'Colon',
(int) 186 => 'Ovary',
(int) 187 => 'Testis',
(int) 188 => 'Adrenal',
(int) 189 => 'Bladder',
(int) 190 => 'Kidney',
(int) 191 => 'Ovary',
(int) 192 => 'Testis',
(int) 193 => 'Brain',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Liver',
(int) 197 => 'Muscle',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Brain',
(int) 201 => 'Brain',
(int) 202 => 'Colon',
(int) 203 => 'Liver',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Ovary',
(int) 207 => 'Placenta',
(int) 208 => 'Adipose',
(int) 209 => 'Brain',
(int) 210 => 'Breast',
(int) 211 => 'Colon',
(int) 212 => 'Heart',
(int) 213 => 'Lung',
(int) 214 => 'Ovary',
(int) 215 => 'Testis',
(int) 216 => 'Bladder',
(int) 217 => 'Brain',
(int) 218 => 'Colon',
(int) 219 => 'Heart',
(int) 220 => 'Kidney',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Testis',
(int) 224 => 'Colon',
(int) 225 => 'Testis',
(int) 226 => 'Adipose',
(int) 227 => 'Adrenal',
(int) 228 => 'Breast',
(int) 229 => 'Colon',
(int) 230 => 'Kidney',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Testis',
(int) 234 => 'Adipose',
(int) 235 => 'Adrenal',
(int) 236 => 'Brain',
(int) 237 => 'Breast',
(int) 238 => 'Colon',
(int) 239 => 'Heart',
(int) 240 => 'Kidney',
(int) 241 => 'Liver',
(int) 242 => 'Lung',
(int) 243 => 'Ovary',
(int) 244 => 'Testis',
(int) 245 => 'Breast',
(int) 246 => 'Liver',
(int) 247 => 'Lung',
(int) 248 => 'Brain',
(int) 249 => 'Heart',
(int) 250 => 'Ovary',
(int) 251 => 'Testis',
(int) 252 => 'Bladder',
(int) 253 => 'Brain',
(int) 254 => 'Breast',
(int) 255 => 'Heart',
(int) 256 => 'Kidney',
(int) 257 => 'Liver',
(int) 258 => 'Lung',
(int) 259 => 'Ovary',
(int) 260 => 'Testis',
(int) 261 => 'Adipose',
(int) 262 => 'Adrenal',
(int) 263 => 'Bladder',
(int) 264 => 'Brain',
(int) 265 => 'Breast',
(int) 266 => 'Colon',
(int) 267 => 'Heart',
(int) 268 => 'Kidney',
(int) 269 => 'Liver',
(int) 270 => 'Lung',
(int) 271 => 'Muscle',
(int) 272 => 'Ovary',
(int) 273 => 'Placenta',
(int) 274 => 'Testis',
(int) 275 => 'Adipose',
(int) 276 => 'Adrenal',
(int) 277 => 'Bladder',
(int) 278 => 'Brain',
(int) 279 => 'Breast',
(int) 280 => 'Heart',
(int) 281 => 'Liver',
(int) 282 => 'Lung',
(int) 283 => 'Ovary',
(int) 284 => 'Placenta',
(int) 285 => 'Testis'
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024420' => array(
[maximum depth reached]
),
'ENSMUSG00000036225' => array(
[maximum depth reached]
),
'ENSMUSG00000036743' => array(
[maximum depth reached]
),
'ENSMUSG00000037013' => array(
[maximum depth reached]
),
'ENSMUSG00000053740' => array(
[maximum depth reached]
),
'ENSMUSG00000054321' => array(
[maximum depth reached]
),
'ENSMUSG00000055795' => array(
[maximum depth reached]
),
'ENSMUSG00000071867' => array(
[maximum depth reached]
),
'ENSMUSG00000094306' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Liver',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Bladder',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Ovary',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Adipose',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Liver'
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
'ENSDARG00000097328' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000134504' => 'potassium channel tetramerization domain containing 1',
'ENSG00000141380' => 'synovial sarcoma translocation, chromosome 18',
'ENSG00000141384' => 'TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa',
'ENSG00000154611' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSG00000188985' => 'dihydrofolate reductase pseudogene 1',
'ENSG00000198795' => 'zinc finger protein 521',
'ENSG00000207160' => 'RNA, U6 small nuclear 1289, pseudogene',
'ENSG00000229248' => 'WW domain binding protein 2 pseudogene 1',
'ENSG00000242216' => 'RNA, 7SL, cytoplasmic 97, pseudogene',
'ENSG00000243925' => 'ribosomal protein S24 pseudogene 18',
'ENSG00000252846' => null,
'ENSG00000260372' => 'AQP4 antisense RNA 1',
'ENSG00000263553' => null,
'ENSG00000263829' => 'family with sequence similarity 60, member B pseudogene',
'ENSG00000263846' => 'cytokine induced apoptosis inhibitor 1 pseudogene',
'ENSG00000263862' => 'long intergenic non-protein coding RNA 1543',
'ENSG00000264193' => null,
'ENSG00000264345' => null,
'ENSG00000264434' => null,
'ENSG00000264911' => null,
'ENSG00000265485' => null,
'ENSG00000265552' => null,
'ENSG00000266227' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2',
'ENSG00000266237' => null,
'ENSG00000266520' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 1',
'ENSG00000266573' => null,
'ENSG00000266809' => null,
'ENSG00000275805' => null,
'ENSG00000276221' => 'microRNA 8057',
'ENSG00000277534' => null,
'ENSG00000279439' => null,
'ENSMUSG00000024420' => 'zinc finger protein 521',
'ENSMUSG00000036225' => 'potassium channel tetramerisation domain containing 1',
'ENSMUSG00000036743' => 'proteasome (prosome, macropain) subunit, alpha type, 8',
'ENSMUSG00000037013' => 'synovial sarcoma translocation, Chromosome 18',
'ENSMUSG00000053740' => 'predicted pseudogene 6457',
'ENSMUSG00000054321' => 'TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor',
'ENSMUSG00000055795' => 'predicted gene 5160',
'ENSMUSG00000071867' => 'predicted gene 6304',
'ENSMUSG00000094306' => 'predicted gene, 24924',
'ENSMUSG00000096288' => 'predicted gene, 22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
)
$gene_name_arr = array(
'ENSG00000134504' => 'KCTD1',
'ENSG00000141380' => 'SS18',
'ENSG00000141384' => 'TAF4B',
'ENSG00000154611' => 'PSMA8',
'ENSG00000188985' => 'DHFRP1',
'ENSG00000198795' => 'ZNF521',
'ENSG00000207160' => 'RNU6-1289P',
'ENSG00000229248' => 'WBP2P1',
'ENSG00000242216' => 'RN7SL97P',
'ENSG00000243925' => 'RPS24P18',
'ENSG00000252846' => 'AC090206.1',
'ENSG00000260372' => 'AQP4-AS1',
'ENSG00000263553' => 'RP11-449D8.2',
'ENSG00000263829' => 'FAM60BP',
'ENSG00000263846' => 'CIAPIN1P',
'ENSG00000263862' => 'RP11-107K17.1',
'ENSG00000264193' => 'RP11-737G21.1',
'ENSG00000264345' => 'RP11-958F21.1',
'ENSG00000264434' => 'CTD-2006O16.2',
'ENSG00000264911' => 'RP11-107K17.2',
'ENSG00000265485' => 'RP11-449D8.1',
'ENSG00000265552' => 'RP11-958F21.3',
'ENSG00000266227' => 'NPM1P2',
'ENSG00000266237' => 'RP11-25D3.1',
'ENSG00000266520' => 'RAC1P1',
'ENSG00000266573' => 'RP11-449D8.5',
'ENSG00000266809' => 'RP11-449D8.3',
'ENSG00000275805' => 'RP11-349H17.2',
'ENSG00000276221' => 'MIR8057',
'ENSG00000277534' => 'RP11-9E17.1',
'ENSG00000279439' => 'CTD-2576N18.1',
'ENSMUSG00000024420' => 'Zfp521',
'ENSMUSG00000036225' => 'Kctd1',
'ENSMUSG00000036743' => 'Psma8',
'ENSMUSG00000037013' => 'Ss18',
'ENSMUSG00000053740' => 'Gm6457',
'ENSMUSG00000054321' => 'Taf4b',
'ENSMUSG00000055795' => 'Gm5160',
'ENSMUSG00000071867' => 'Gm6304',
'ENSMUSG00000094306' => 'Gm24924',
'ENSMUSG00000096288' => 'Gm22251',
'ENSDARG00000097328' => 'si:ch73-305a18.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0001',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '24628254',
'seq_end' => '26687255',
'region_length' => '2059001',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0002',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '13186157',
'seq_end' => '15176263',
'region_length' => '1990106',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '2277465',
'seq_end' => '2351484',
'region_length' => '74019',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '18251540',
'seq_end' => '18251797',
'region_length' => '257',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 67 => 'Brain',
(int) 106 => 'Breast',
(int) 141 => 'Colon',
(int) 167 => 'Heart',
(int) 200 => 'Kidney',
(int) 223 => 'Liver',
(int) 252 => 'Lung',
(int) 279 => 'Muscle',
(int) 302 => 'Ovary',
(int) 347 => 'Placenta',
(int) 373 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 107
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000317932' => array(
'start' => '26454913',
'end' => '26629242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-201'
),
'ENST00000408011' => array(
'start' => '26454974',
'end' => '26549435',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-003'
),
'ENST00000417602' => array(
'start' => '26454913',
'end' => '26549814',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-202'
),
'ENST00000577255' => array(
'start' => '26455713',
'end' => '26476891',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KCTD1-004'
),
'ENST00000578973' => array(
'start' => '26459789',
'end' => '26546999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-006'
),
'ENST00000579973' => array(
'start' => '26454910',
'end' => '26640344',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-001'
),
'ENST00000580059' => array(
'start' => '26455498',
'end' => '26547118',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-005'
),
'ENST00000580191' => array(
'start' => '26455760',
'end' => '26657401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-009'
),
'ENST00000580638' => array(
'start' => '26455892',
'end' => '26549819',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCTD1-002'
),
'ENST00000582494' => array(
'start' => '26455770',
'end' => '26460876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-007'
),
'ENST00000584630' => array(
'start' => '26581162',
'end' => '26657394',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCTD1-008'
),
'ENST00000269137' => array(
'start' => '26018014',
'end' => '26090901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-001'
),
'ENST00000269138' => array(
'start' => '26018007',
'end' => '26090598',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-007'
),
'ENST00000415083' => array(
'start' => '26016253',
'end' => '26090625',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-003'
),
'ENST00000539244' => array(
'start' => '26035091',
'end' => '26090613',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-006'
),
'ENST00000542420' => array(
'start' => '26017343',
'end' => '26091217',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-002'
),
'ENST00000577572' => array(
'start' => '26057699',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-011'
),
'ENST00000577636' => array(
'start' => '26052743',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-026'
),
'ENST00000577751' => array(
'start' => '26064832',
'end' => '26090135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-008'
),
'ENST00000578595' => array(
'start' => '26080371',
'end' => '26090100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-021'
),
'ENST00000578700' => array(
'start' => '26052823',
'end' => '26091216',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-010'
),
'ENST00000578954' => array(
'start' => '26052682',
'end' => '26090652',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-014'
),
'ENST00000579061' => array(
'start' => '26052705',
'end' => '26091192',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-024'
),
'ENST00000579640' => array(
'start' => '26017885',
'end' => '26090610',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-004'
),
'ENST00000580003' => array(
'start' => '26068260',
'end' => '26078386',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-012'
),
'ENST00000580642' => array(
'start' => '26078103',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-019'
),
'ENST00000580751' => array(
'start' => '26078076',
'end' => '26090625',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-018'
),
'ENST00000580958' => array(
'start' => '26018350',
'end' => '26035614',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SS18-013'
),
'ENST00000581021' => array(
'start' => '26057695',
'end' => '26090135',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-022'
),
'ENST00000581570' => array(
'start' => '26057732',
'end' => '26090608',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-016'
),
'ENST00000582092' => array(
'start' => '26023613',
'end' => '26035065',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-027'
),
'ENST00000582448' => array(
'start' => '26057719',
'end' => '26091192',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-009'
),
'ENST00000582792' => array(
'start' => '26057612',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-017'
),
'ENST00000583595' => array(
'start' => '26082383',
'end' => '26086027',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-015'
),
'ENST00000584083' => array(
'start' => '26052771',
'end' => '26090096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SS18-023'
),
'ENST00000585121' => array(
'start' => '26018120',
'end' => '26090597',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SS18-005'
),
'ENST00000585241' => array(
'start' => '26039410',
'end' => '26090625',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SS18-025'
),
'ENST00000269142' => array(
'start' => '26225936',
'end' => '26391685',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-002'
),
'ENST00000400466' => array(
'start' => '26226445',
'end' => '26391678',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-201'
),
'ENST00000418698' => array(
'start' => '26226883',
'end' => '26391683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAF4B-003'
),
'ENST00000578121' => array(
'start' => '26226486',
'end' => '26390164',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAF4B-001'
),
'ENST00000308268' => array(
'start' => '26133877',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-001'
),
'ENST00000343848' => array(
'start' => '26133874',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-003'
),
'ENST00000415576' => array(
'start' => '26133852',
'end' => '26192824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-002'
),
'ENST00000538664' => array(
'start' => '26133852',
'end' => '26193355',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PSMA8-004'
),
'ENST00000612461' => array(
'start' => '26140086',
'end' => '26193355',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PSMA8-201'
),
'ENST00000579682' => array(
'start' => '26170726',
'end' => '26171284',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'DHFRP1-001'
),
'ENST00000361524' => array(
'start' => '25061926',
'end' => '25352152',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-001'
),
'ENST00000399425' => array(
'start' => '25062451',
'end' => '25352071',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZNF521-004'
),
'ENST00000538137' => array(
'start' => '25062593',
'end' => '25352155',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-002'
),
'ENST00000577461' => array(
'start' => '25322137',
'end' => '25351193',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-009'
),
'ENST00000577720' => array(
'start' => '25227203',
'end' => '25231530',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-012'
),
'ENST00000577775' => array(
'start' => '25136718',
'end' => '25224789',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-013'
),
'ENST00000577801' => array(
'start' => '25227244',
'end' => '25351747',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-010'
),
'ENST00000579111' => array(
'start' => '25227607',
'end' => '25352190',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-005'
),
'ENST00000580488' => array(
'start' => '25227486',
'end' => '25351615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-008'
),
'ENST00000581869' => array(
'start' => '25227388',
'end' => '25302034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-014'
),
'ENST00000582584' => array(
'start' => '25315524',
'end' => '25352149',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-007'
),
'ENST00000583005' => array(
'start' => '25227587',
'end' => '25352170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZNF521-006'
),
'ENST00000583398' => array(
'start' => '25227620',
'end' => '25322335',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZNF521-011'
),
'ENST00000584787' => array(
'start' => '25062425',
'end' => '25352148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZNF521-003'
),
'ENST00000384431' => array(
'start' => '26366301',
'end' => '26366406',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1289P-201'
),
'ENST00000427605' => array(
'start' => '25016434',
'end' => '25017204',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'WBP2P1-001'
),
'ENST00000486780' => array(
'start' => '25818234',
'end' => '25818532',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL97P-201'
),
'ENST00000468051' => array(
'start' => '26098839',
'end' => '26099226',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS24P18-001'
),
'ENST00000517037' => array(
'start' => '26586714',
'end' => '26586798',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC090206.1-201'
),
'ENST00000568797' => array(
'start' => '26865308',
'end' => '26935946',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-001'
),
'ENST00000578701' => array(
'start' => '26865307',
'end' => '27190698',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-003'
),
'ENST00000579964' => array(
'start' => '26655743',
'end' => '26933085',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-004'
),
'ENST00000582605' => array(
'start' => '26655742',
'end' => '26930757',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AQP4-AS1-002'
),
'ENST00000578490' => array(
'start' => '24673163',
'end' => '24674348',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.2-001'
),
'ENST00000578364' => array(
'start' => '26255698',
'end' => '26256355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'FAM60BP-001'
),
'ENST00000584883' => array(
'start' => '26599408',
'end' => '26600338',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CIAPIN1P-001'
),
'ENST00000578367' => array(
'start' => '26422995',
'end' => '26426101',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-107K17.1-001'
),
'ENST00000583887' => array(
'start' => '25953216',
'end' => '25953468',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-737G21.1-001'
),
'ENST00000580984' => array(
'start' => '24933487',
'end' => '24987682',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-002'
),
'ENST00000582697' => array(
'start' => '24954207',
'end' => '24987665',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.1-001'
),
'ENST00000580645' => array(
'start' => '25302126',
'end' => '25302960',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTD-2006O16.2-001'
),
'ENST00000582910' => array(
'start' => '26348347',
'end' => '26349004',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-107K17.2-001'
),
'ENST00000577994' => array(
'start' => '24628182',
'end' => '24662198',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-001'
),
'ENST00000583558' => array(
'start' => '24656993',
'end' => '24660405',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.1-002'
),
'ENST00000578129' => array(
'start' => '25055600',
'end' => '25056760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-958F21.3-001'
),
'ENST00000578162' => array(
'start' => '26204869',
'end' => '26205904',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P2-001'
),
'ENST00000580975' => array(
'start' => '26266009',
'end' => '26267409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-25D3.1-001'
),
'ENST00000578535' => array(
'start' => '24685772',
'end' => '24686351',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P1-001'
),
'ENST00000577354' => array(
'start' => '24725781',
'end' => '24766645',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-001'
),
'ENST00000582650' => array(
'start' => '24725853',
'end' => '24929076',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-002'
),
'ENST00000583794' => array(
'start' => '24725944',
'end' => '24744878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-449D8.5-003'
),
'ENST00000579571' => array(
'start' => '24689914',
'end' => '24690161',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-449D8.3-001'
),
'ENST00000615734' => array(
'start' => '26565723',
'end' => '26575626',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-349H17.2-001'
),
'ENST00000620957' => array(
'start' => '26591467',
'end' => '26591535',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8057-201'
),
'ENST00000620414' => array(
'start' => '26542971',
'end' => '26545791',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-9E17.1-001'
),
'ENST00000624795' => array(
'start' => '25200976',
'end' => '25202837',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2576N18.1-001'
),
'ENSMUST00000025288' => array(
'start' => '13687013',
'end' => '13972733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zfp521-201'
),
'ENSMUST00000025992' => array(
'start' => '14968685',
'end' => '15151446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-201'
),
'ENSMUST00000168989' => array(
'start' => '14968685',
'end' => '15063582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kctd1-202'
),
'ENSMUST00000040860' => array(
'start' => '14706151',
'end' => '14762299',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Psma8-201'
),
'ENSMUST00000040924' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-201'
),
'ENSMUST00000040964' => array(
'start' => '14624198',
'end' => '14682766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-202'
),
'ENSMUST00000092041' => array(
'start' => '14625631',
'end' => '14682914',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ss18-203'
),
'ENSMUST00000066378' => array(
'start' => '14570101',
'end' => '14570915',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6457-201'
),
'ENSMUST00000169862' => array(
'start' => '14783245',
'end' => '14900359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taf4b-201'
),
'ENSMUST00000069552' => array(
'start' => '14424868',
'end' => '14425311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm5160-201'
),
'ENSMUST00000096579' => array(
'start' => '15011246',
'end' => '15011692',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm6304-201'
),
'ENSMUST00000084007' => array(
'start' => '14647767',
'end' => '14647930',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24924-201'
),
'ENSMUST00000083216' => array(
'start' => '13209702',
'end' => '13209808',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22251-201'
),
'ENSDART00000156951' => array(
'start' => '2335096',
'end' => '2351472',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-305a18.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LU_0001' => array(
'genes_in_region' => array(
'ENSG00000141380' => array(
[maximum depth reached]
),
'ENSG00000141384' => array(
[maximum depth reached]
),
'ENSG00000154611' => array(
[maximum depth reached]
),
'ENSG00000188985' => array(
[maximum depth reached]
),
'ENSG00000198795' => array(
[maximum depth reached]
),
'ENSG00000207160' => array(
[maximum depth reached]
),
'ENSG00000243925' => array(
[maximum depth reached]
),
'ENSG00000260372' => array(
[maximum depth reached]
),
'ENSG00000263553' => array(
[maximum depth reached]
),
'ENSG00000263829' => array(
[maximum depth reached]
),
'ENSG00000263846' => array(
[maximum depth reached]
),
'ENSG00000263862' => array(
[maximum depth reached]
),
'ENSG00000264345' => array(
[maximum depth reached]
),
'ENSG00000264434' => array(
[maximum depth reached]
),
'ENSG00000264911' => array(
[maximum depth reached]
),
'ENSG00000265485' => array(
[maximum depth reached]
),
'ENSG00000265552' => array(
[maximum depth reached]
),
'ENSG00000266227' => array(
[maximum depth reached]
),
'ENSG00000266237' => array(
[maximum depth reached]
),
'ENSG00000266520' => array(
[maximum depth reached]
),
'ENSG00000266573' => array(
[maximum depth reached]
),
'ENSG00000275805' => array(
[maximum depth reached]
),
'ENSG00000277534' => array(
[maximum depth reached]
),
'ENSG00000279439' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Lung',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Ovary',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Adipose',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Kidney',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Bladder',
(int) 52 => 'Breast',
(int) 53 => 'Heart',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Breast',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Ovary',
(int) 76 => 'Adipose',
(int) 77 => 'Adrenal',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adipose',
(int) 89 => 'Adrenal',
(int) 90 => 'Bladder',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Brain',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Heart',
(int) 114 => 'Ovary',
(int) 115 => 'Placenta',
(int) 116 => 'Testis',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Ovary',
(int) 127 => 'Adipose',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Ovary',
(int) 134 => 'Placenta',
(int) 135 => 'Testis',
(int) 136 => 'Muscle',
(int) 137 => 'Heart',
(int) 138 => 'Liver',
(int) 139 => 'Bladder',
(int) 140 => 'Breast',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Testis',
(int) 144 => 'Colon',
(int) 145 => 'Muscle',
(int) 146 => 'Brain',
(int) 147 => 'Breast',
(int) 148 => 'Liver',
(int) 149 => 'Lung',
(int) 150 => 'Muscle',
(int) 151 => 'Ovary',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Lung',
(int) 164 => 'Muscle',
(int) 165 => 'Ovary',
(int) 166 => 'Placenta',
(int) 167 => 'Testis',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Lung',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Heart',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Heart',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Lung',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Bladder',
(int) 183 => 'Brain',
(int) 184 => 'Breast',
(int) 185 => 'Colon',
(int) 186 => 'Ovary',
(int) 187 => 'Testis',
(int) 188 => 'Adrenal',
(int) 189 => 'Bladder',
(int) 190 => 'Kidney',
(int) 191 => 'Ovary',
(int) 192 => 'Testis',
(int) 193 => 'Brain',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Liver',
(int) 197 => 'Muscle',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Brain',
(int) 201 => 'Brain',
(int) 202 => 'Colon',
(int) 203 => 'Liver',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Ovary',
(int) 207 => 'Placenta',
(int) 208 => 'Adipose',
(int) 209 => 'Brain',
(int) 210 => 'Breast',
(int) 211 => 'Colon',
(int) 212 => 'Heart',
(int) 213 => 'Lung',
(int) 214 => 'Ovary',
(int) 215 => 'Testis',
(int) 216 => 'Bladder',
(int) 217 => 'Brain',
(int) 218 => 'Colon',
(int) 219 => 'Heart',
(int) 220 => 'Kidney',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Testis',
(int) 224 => 'Colon',
(int) 225 => 'Testis',
(int) 226 => 'Adipose',
(int) 227 => 'Adrenal',
(int) 228 => 'Breast',
(int) 229 => 'Colon',
(int) 230 => 'Kidney',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Testis',
(int) 234 => 'Adipose',
(int) 235 => 'Adrenal',
(int) 236 => 'Brain',
(int) 237 => 'Breast',
(int) 238 => 'Colon',
(int) 239 => 'Heart',
(int) 240 => 'Kidney',
(int) 241 => 'Liver',
(int) 242 => 'Lung',
(int) 243 => 'Ovary',
(int) 244 => 'Testis',
(int) 245 => 'Breast',
(int) 246 => 'Liver',
(int) 247 => 'Lung',
(int) 248 => 'Brain',
(int) 249 => 'Heart',
(int) 250 => 'Ovary',
(int) 251 => 'Testis',
(int) 252 => 'Bladder',
(int) 253 => 'Brain',
(int) 254 => 'Breast',
(int) 255 => 'Heart',
(int) 256 => 'Kidney',
(int) 257 => 'Liver',
(int) 258 => 'Lung',
(int) 259 => 'Ovary',
(int) 260 => 'Testis',
(int) 261 => 'Adipose',
(int) 262 => 'Adrenal',
(int) 263 => 'Bladder',
(int) 264 => 'Brain',
(int) 265 => 'Breast',
(int) 266 => 'Colon',
(int) 267 => 'Heart',
(int) 268 => 'Kidney',
(int) 269 => 'Liver',
(int) 270 => 'Lung',
(int) 271 => 'Muscle',
(int) 272 => 'Ovary',
(int) 273 => 'Placenta',
(int) 274 => 'Testis',
(int) 275 => 'Adipose',
(int) 276 => 'Adrenal',
(int) 277 => 'Bladder',
(int) 278 => 'Brain',
(int) 279 => 'Breast',
(int) 280 => 'Heart',
(int) 281 => 'Liver',
(int) 282 => 'Lung',
(int) 283 => 'Ovary',
(int) 284 => 'Placenta',
(int) 285 => 'Testis'
)
),
'CIL_0007LU_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000024420' => array(
[maximum depth reached]
),
'ENSMUSG00000036225' => array(
[maximum depth reached]
),
'ENSMUSG00000036743' => array(
[maximum depth reached]
),
'ENSMUSG00000037013' => array(
[maximum depth reached]
),
'ENSMUSG00000053740' => array(
[maximum depth reached]
),
'ENSMUSG00000054321' => array(
[maximum depth reached]
),
'ENSMUSG00000055795' => array(
[maximum depth reached]
),
'ENSMUSG00000071867' => array(
[maximum depth reached]
),
'ENSMUSG00000094306' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Liver',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Bladder',
(int) 106 => 'Brain',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Ovary',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Adipose',
(int) 113 => 'Adrenal',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Brain',
(int) 126 => 'Liver'
)
),
'CIL_0007LU_0003' => array(
'genes_in_region' => array(
'ENSDARG00000097328' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LU_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '18251540',
'seq_end' => '18251797',
'region_length' => '257',
'region_type' => 'UCNEbase',
'el_id' => 'ZNF521'
)
)
$gene_el = array(
'ENSDART00000156951' => array(
'Brain' => array(
'average_FPKM' => '38.948',
'stddev_FPKM' => '27.19'
),
'Heart' => array(
'average_FPKM' => '3.924',
'stddev_FPKM' => '3.51'
),
'Muscle' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000097328'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '38.948',
'stddev_FPKM' => '27.19'
),
'Heart' => array(
'average_FPKM' => '3.924',
'stddev_FPKM' => '3.51'
),
'Muscle' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000156951'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SS18)