C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008CS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1566 VISTA 9606 18:25552759-26154861
GeneTranscriptPositionBiotype
ENSG00000141380 (SS18)
synovial sarcoma translocation, chromosome 18 		ENST00000269137 (SS18-001) 26018014-26090901 protein_coding
ENST00000269138 (SS18-007) 26018007-26090598 nonsense_mediated_decay
ENST00000415083 (SS18-003) 26016253-26090625 protein_coding
ENST00000539244 (SS18-006) 26035091-26090613 nonsense_mediated_decay
ENST00000542420 (SS18-002) 26017343-26091217 protein_coding
ENST00000577572 (SS18-011) 26057699-26090625 nonsense_mediated_decay
ENST00000577636 (SS18-026) 26052743-26091192 nonsense_mediated_decay
ENST00000577751 (SS18-008) 26064832-26090135 processed_transcript
ENST00000578595 (SS18-021) 26080371-26090100 processed_transcript
ENST00000578700 (SS18-010) 26052823-26091216 nonsense_mediated_decay
ENST00000578954 (SS18-014) 26052682-26090652 nonsense_mediated_decay
ENST00000579061 (SS18-024) 26052705-26091192 protein_coding
ENST00000579640 (SS18-004) 26017885-26090610 nonsense_mediated_decay
ENST00000580003 (SS18-012) 26068260-26078386 retained_intron
ENST00000580642 (SS18-019) 26078103-26090625 nonsense_mediated_decay
ENST00000580751 (SS18-018) 26078076-26090625 nonsense_mediated_decay
ENST00000580958 (SS18-013) 26018350-26035614 retained_intron
ENST00000581021 (SS18-022) 26057695-26090135 protein_coding
ENST00000581570 (SS18-016) 26057732-26090608 nonsense_mediated_decay
ENST00000582092 (SS18-027) 26023613-26035065 processed_transcript
ENST00000582448 (SS18-009) 26057719-26091192 nonsense_mediated_decay
ENST00000582792 (SS18-017) 26057612-26090597 nonsense_mediated_decay
ENST00000583595 (SS18-015) 26082383-26086027 processed_transcript
ENST00000584083 (SS18-023) 26052771-26090096 protein_coding
ENST00000585121 (SS18-005) 26018120-26090597 nonsense_mediated_decay
ENST00000585241 (SS18-025) 26039410-26090625 processed_transcript
ENSG00000154611 (PSMA8)
proteasome (prosome, macropain) subunit, alpha type, 8 		ENST00000308268 (PSMA8-001) 26133877-26193355 protein_coding
ENST00000343848 (PSMA8-003) 26133874-26193355 protein_coding
ENST00000415576 (PSMA8-002) 26133852-26192824 protein_coding
ENST00000538664 (PSMA8-004) 26133852-26193355 nonsense_mediated_decay
ENST00000612461 (PSMA8-201) 26140086-26193355 protein_coding
ENSG00000243925 (RPS24P18)
ribosomal protein S24 pseudogene 18 		ENST00000468051 (RPS24P18-001) 26098839-26099226 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008CS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1566 VISTA 10090 18:14158160-14760150
GeneTranscriptPositionBiotype
ENSMUSG00000036743 (Psma8)
proteasome (prosome, macropain) subunit, alpha type, 8 		ENSMUST00000040860 (Psma8-201) 14706151-14762299 protein_coding
ENSMUSG00000037013 (Ss18)
synovial sarcoma translocation, Chromosome 18 		ENSMUST00000040924 (Ss18-201) 14625631-14682914 protein_coding
ENSMUST00000040964 (Ss18-202) 14624198-14682766 protein_coding
ENSMUST00000092041 (Ss18-203) 14625631-14682914 protein_coding
ENSMUSG00000053740 (Gm6457)
predicted pseudogene 6457 		ENSMUST00000066378 (Gm6457-201) 14570101-14570915 processed_pseudogene
ENSMUSG00000055795 (Gm5160)
predicted gene 5160 		ENSMUST00000069552 (Gm5160-201) 14424868-14425311 protein_coding
ENSMUSG00000094306 (Gm24924)
predicted gene, 24924 		ENSMUST00000084007 (Gm24924-201) 14647767-14647930 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008CS_0001ENSG00000141380ENST00000269137ENST00000415083ENST00000542420ENST00000580003ENSG00000154611ENST00000308268ENST00000343848ENST00000415576ENST00000612461ENSG00000243925ENST00000468051CIL_0008CS_0002ENSMUSG00000036743ENSMUST00000040860ENSMUSG00000037013ENSMUST00000040924ENSMUST00000092041ENSMUSG00000053740ENSMUST00000066378ENSMUSG00000055795ENSMUST00000069552ENSMUSG00000094306ENSMUST00000084007
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141380 ENST00000269137 N/A N/A 3.123±0.00 N/A 4.659±0.00 N/A 2.584±0.00 N/A 4.224±0.00 N/A 1.507±0.00 6.621±0.00 N/A N/A
ENST00000269138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415083 4.784±0.00 5.591±0.00 0.937±0.00 5.456±1.09 11.674±0.00 5.357±0.00 4.664±1.65 10.251±0.00 2.499±0.29 7.562±3.62 1.011±0.30 10.441±7.70 4.728±1.36 8.094±4.00
ENST00000539244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542420 N/A N/A N/A N/A 2.531±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580003 N/A N/A 7.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154611 ENST00000308268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A 1.029±0.00
ENST00000343848 0.045±0.00 0.073±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A 0.011±0.00 0.074±0.00 1.265±0.00
ENST00000415576 N/A N/A N/A 0.039±0.00 0.070±0.02 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.245±0.14 7.968±5.83
ENST00000538664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.01 0.122±0.06 3.044±0.97
ENSG00000243925 ENST00000468051 N/A N/A N/A 0.029±0.00 0.028±0.00 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 0.255±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036743 ENSMUST00000040860 0.144±0.02 0.279±0.14 0.072±0.02 0.086±0.03 0.080±0.04 0.106±0.04 0.125±0.10 0.084±0.08 0.511±0.15 0.194±0.06 0.023±0.00 0.665±0.37 0.098±0.05 28.959±7.46
ENSMUSG00000037013 ENSMUST00000040924 6.179±2.19 16.396±3.00 7.211±0.73 3.438±1.98 8.770±2.98 4.901±0.88 6.456±0.23 4.617±1.17 2.798±0.82 7.981±2.68 2.239±0.76 17.490±7.58 5.189±1.55 12.581±6.68
ENSMUST00000040964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000092041 22.079±5.86 37.063±2.33 19.791±1.76 12.045±6.79 19.614±10.87 18.159±4.77 6.034±1.06 17.128±4.66 12.534±2.93 33.403±5.00 1.655±0.81 54.031±17.07 15.727±3.12 5.389±1.18
ENSMUSG00000053740 ENSMUST00000066378 0.956±0.67 0.330±0.00 0.849±0.01 2.244±2.01 0.812±0.46 0.298±0.13 0.448±0.51 0.448±0.36 0.678±0.63 1.387±0.10 0.090±0.02 0.840±0.29 0.124±0.08 0.308±0.20
ENSMUSG00000055795 ENSMUST00000069552 N/A N/A 0.170±0.02 0.121±0.10 0.366±0.00 N/A N/A N/A 0.038±0.03 N/A N/A 0.214±0.00 0.232±0.26 0.111±0.00
ENSMUSG00000094306 ENSMUST00000084007 N/A N/A 7.245±0.00 24.995±0.00 N/A N/A N/A N/A 7.245±0.29 N/A N/A N/A N/A N/A

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