C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synovial sarcoma translocation, chromosome 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415083 SS18-003 ENSG00000141380 9606 - 18:26016253-26090625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000415083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415083 4.784±0.00 5.591±0.00 0.937±0.00 5.456±1.09 11.674±0.00 5.357±0.00 4.664±1.65 10.251±0.00 2.499±0.29 7.562±3.62 1.011±0.30 10.441±7.70 4.728±1.36 8.094±4.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0008CS CIL_0008CS_0001 VISTA 18:25552759-26154861
CIL_0006ET CIL_0006ET_0001 CGP 18:26016253-26193355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000902 IEA cell morphogenesis
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005881 IEA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035556 IEA intracellular signal transduction
GO:0042493 IEA response to drug
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048013 IEA ephrin receptor signaling pathway
GO:0071564 IEA npBAF complex
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040924 Ss18-201 protein_coding Mus_musculus 0 2351
ENSMUST00000040964 Ss18-202 protein_coding Mus_musculus 0 1489
ENSMUST00000092041 Ss18-203 protein_coding Mus_musculus 0 1247
ENSMUST00000118646 Gm1826-001 processed_pseudogene Mus_musculus 0 1140
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000005 58

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