C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial sarcoma translocation, Chromosome 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037013 Ss18 10090 - 18:14624198-14682914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040924 Ss18-201 14625631-14682914 protein_coding
  ENSMUST00000040964 Ss18-202 14624198-14682766 protein_coding
  ENSMUST00000092041 Ss18-203 14625631-14682914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040924ENSMUST00000092041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040924 6.179±2.19 16.396±3.00 7.211±0.73 3.438±1.98 8.770±2.98 4.901±0.88 6.456±0.23 4.617±1.17 2.798±0.82 7.981±2.68 2.239±0.76 17.490±7.58 5.189±1.55 12.581±6.68
ENSMUST00000092041 22.079±5.86 37.063±2.33 19.791±1.76 12.045±6.79 19.614±10.87 18.159±4.77 6.034±1.06 17.128±4.66 12.534±2.93 33.403±5.00 1.655±0.81 54.031±17.07 15.727±3.12 5.389±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0002 UCNEbase 18:13186157-15176263
CIL_0008CS CIL_0008CS_0002 VISTA 18:14158160-14760150
CIL_0006ET CIL_0006ET_0002 CGP 18:14624198-14762299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000902 IDA cell morphogenesis
GO:0005515 IEA protein binding
GO:0005881 IDA cytoplasmic microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IDA cytoskeleton organization
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035556 IDA intracellular signal transduction
GO:0042493 IDA response to drug
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048013 IDA ephrin receptor signaling pathway
GO:0071564 IDA npBAF complex
GO:0097150 IMP neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000141380 SS18 synovial sarcoma translocation, chromosome 18 protein_coding Homo_sapiens

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