C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141384 TAF4B 9606 + 18:26225936-26391685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269142 TAF4B-002 26225936-26391685 protein_coding
  ENST00000400466 TAF4B-201 26226445-26391678 protein_coding
  ENST00000418698 TAF4B-003 26226883-26391683 nonsense_mediated_decay
  ENST00000578121 TAF4B-001 26226486-26390164 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269142ENST00000400466ENST00000418698ENST00000578121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269142 N/A N/A N/A 0.340±0.00 0.137±0.00 N/A N/A N/A N/A N/A N/A 0.832±0.00 N/A N/A
ENST00000400466 0.963±0.00 1.986±0.00 N/A 0.835±0.00 0.714±0.00 1.006±0.00 0.400±0.00 0.537±0.00 0.061±0.00 N/A 1.255±0.00 0.714±0.42 0.890±0.50 3.177±0.65
ENST00000418698 0.130±0.00 1.307±0.00 0.422±0.00 0.182±0.00 0.400±0.00 0.451±0.00 0.054±0.00 0.606±0.00 N/A 0.755±0.10 0.436±0.00 0.521±0.03 0.751±0.11 1.121±0.21
ENST00000578121 N/A N/A N/A 1.351±0.00 N/A N/A 0.160±0.00 0.060±0.00 0.429±0.00 0.517±0.00 N/A 0.852±0.60 0.430±0.16 1.966±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0000QZ CIL_0000QZ_0001 CGP 18:26133852-26391685
CIL_0006ER CIL_0006ER_0001 CGP 18:26225936-26657401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IEA transcription factor TFIID complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0046982 IEA protein heterodimerization activity
GO:0051059 IPI NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075732 taf4b TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000054321 Taf4b TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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