C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006ER_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141384-ENSG00000134504 CGP 9606 18:26225936-26657401
GeneTranscriptPositionBiotype
ENSG00000141384 (TAF4B)
TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa 		ENST00000269142 (TAF4B-002) 26225936-26391685 protein_coding
ENST00000400466 (TAF4B-201) 26226445-26391678 protein_coding
ENST00000418698 (TAF4B-003) 26226883-26391683 nonsense_mediated_decay
ENST00000578121 (TAF4B-001) 26226486-26390164 protein_coding
ENSG00000207160 (RNU6-1289P)
RNA, U6 small nuclear 1289, pseudogene 		ENST00000384431 (RNU6-1289P-201) 26366301-26366406 snRNA
ENSG00000260372 (AQP4-AS1)
AQP4 antisense RNA 1 		ENST00000568797 (AQP4-AS1-001) 26865308-26935946 antisense
ENST00000578701 (AQP4-AS1-003) 26865307-27190698 antisense
ENST00000579964 (AQP4-AS1-004) 26655743-26933085 antisense
ENST00000582605 (AQP4-AS1-002) 26655742-26930757 antisense
ENSG00000263829 (FAM60BP)
family with sequence similarity 60, member B pseudogene 		ENST00000578364 (FAM60BP-001) 26255698-26256355 processed_pseudogene
ENSG00000263846 (CIAPIN1P)
cytokine induced apoptosis inhibitor 1 pseudogene 		ENST00000584883 (CIAPIN1P-001) 26599408-26600338 processed_pseudogene
ENSG00000263862 (RP11-107K17.1)
long intergenic non-protein coding RNA 1543 		ENST00000578367 (RP11-107K17.1-001) 26422995-26426101 lincRNA
ENSG00000264911 (RP11-107K17.2)
 ENST00000582910 (RP11-107K17.2-001) 26348347-26349004 processed_pseudogene
ENSG00000266237 (RP11-25D3.1)
 ENST00000580975 (RP11-25D3.1-001) 26266009-26267409 sense_intronic
ENSG00000275805 (RP11-349H17.2)
 ENST00000615734 (RP11-349H17.2-001) 26565723-26575626 sense_intronic
ENSG00000277534 (RP11-9E17.1)
 ENST00000620414 (RP11-9E17.1-001) 26542971-26545791 sense_intronic
CIL_0006ER_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054321-ENSMUSG00000036225 CGP 10090 18:14783245-15151446
GeneTranscriptPositionBiotype
ENSMUSG00000036225 (Kctd1)
potassium channel tetramerisation domain containing 1 		ENSMUST00000025992 (Kctd1-201) 14968685-15151446 protein_coding
ENSMUST00000168989 (Kctd1-202) 14968685-15063582 protein_coding
ENSMUSG00000054321 (Taf4b)
TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000169862 (Taf4b-201) 14783245-14900359 protein_coding
ENSMUSG00000071867 (Gm6304)
predicted gene 6304 		ENSMUST00000096579 (Gm6304-201) 15011246-15011692 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ER_0001ENSG00000141384ENST00000269142ENST00000400466ENST00000418698ENST00000578121ENSG00000207160ENST00000384431ENSG00000260372ENST00000568797ENST00000578701ENST00000579964ENST00000582605ENSG00000263829ENST00000578364ENSG00000263846ENST00000584883ENSG00000263862ENST00000578367ENSG00000264911ENST00000582910ENSG00000266237ENST00000580975ENSG00000275805ENST00000615734ENSG00000277534ENST00000620414CIL_0006ER_0002ENSMUSG00000036225ENSMUST00000025992ENSMUST00000168989ENSMUSG00000054321ENSMUST00000169862ENSMUSG00000071867ENSMUST00000096579
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ER_0001ENSG00000141384ENST00000269142ENST00000400466ENST00000418698ENST00000578121ENSG00000207160ENST00000384431ENSG00000260372ENST00000568797ENST00000578701ENST00000579964ENST00000582605ENSG00000263829ENST00000578364ENSG00000263846ENST00000584883ENSG00000263862ENST00000578367ENSG00000264911ENST00000582910ENSG00000266237ENST00000580975ENSG00000275805ENST00000615734ENSG00000277534ENST00000620414CIL_0006ER_0002ENSMUSG00000036225ENSMUST00000025992ENSMUST00000168989ENSMUSG00000054321ENSMUST00000169862ENSMUSG00000071867ENSMUST00000096579
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141384 ENST00000269142 N/A N/A N/A 0.340±0.00 0.137±0.00 N/A N/A N/A N/A N/A N/A 0.832±0.00 N/A N/A
ENST00000400466 0.963±0.00 1.986±0.00 N/A 0.835±0.00 0.714±0.00 1.006±0.00 0.400±0.00 0.537±0.00 0.061±0.00 N/A 1.255±0.00 0.714±0.42 0.890±0.50 3.177±0.65
ENST00000418698 0.130±0.00 1.307±0.00 0.422±0.00 0.182±0.00 0.400±0.00 0.451±0.00 0.054±0.00 0.606±0.00 N/A 0.755±0.10 0.436±0.00 0.521±0.03 0.751±0.11 1.121±0.21
ENST00000578121 N/A N/A N/A 1.351±0.00 N/A N/A 0.160±0.00 0.060±0.00 0.429±0.00 0.517±0.00 N/A 0.852±0.60 0.430±0.16 1.966±0.00
ENSG00000207160 ENST00000384431 N/A 0.546±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260372 ENST00000568797 0.085±0.00 0.193±0.00 N/A 0.689±0.00 0.075±0.05 N/A 0.066±0.00 0.042±0.00 N/A 0.146±0.05 0.019±0.00 0.024±0.01 0.024±0.01 0.170±0.03
ENST00000578701 N/A N/A N/A N/A N/A N/A 0.014±0.00 0.018±0.00 N/A 0.134±0.01 N/A 0.029±0.00 N/A 0.083±0.01
ENST00000579964 N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000582605 0.098±0.00 N/A N/A 0.870±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263829 ENST00000578364 N/A N/A N/A 0.118±0.06 N/A 0.019±0.00 N/A N/A N/A 0.435±0.00 N/A 0.197±0.00 N/A 0.074±0.00
ENSG00000263846 ENST00000584883 N/A N/A 0.116±0.00 0.057±0.00 0.019±0.00 0.017±0.00 N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.028±0.00
ENSG00000263862 ENST00000578367 N/A 0.097±0.00 0.480±0.00 N/A N/A N/A N/A 1.451±0.00 N/A N/A N/A 0.035±0.00 N/A 0.381±0.23
ENSG00000264911 ENST00000582910 N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.07 0.056±0.00 N/A
ENSG00000266237 ENST00000580975 0.232±0.00 0.221±0.00 N/A 0.096±0.00 0.121±0.00 0.119±0.11 0.082±0.00 0.199±0.00 0.044±0.00 0.356±0.30 N/A 0.286±0.45 N/A 0.148±0.00
ENSG00000275805 ENST00000615734 N/A N/A 0.090±0.00 0.019±0.00 0.008±0.00 N/A 0.015±0.00 0.063±0.00 0.030±0.00 0.050±0.00 N/A 0.049±0.01 N/A 0.022±0.00
ENSG00000277534 ENST00000620414 0.092±0.00 0.233±0.00 1.828±0.00 0.504±0.33 0.275±0.03 0.564±0.20 0.173±0.05 1.534±1.38 0.210±0.00 0.191±0.14 0.149±0.00 0.595±0.10 0.464±0.11 0.961±0.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036225 ENSMUST00000025992 N/A N/A N/A 3.986±2.10 0.417±0.00 N/A N/A N/A 0.122±0.09 N/A 0.114±0.01 5.173±2.03 0.486±0.46 0.177±0.09
ENSMUST00000168989 2.022±1.91 5.633±0.93 3.141±1.31 4.413±1.63 1.261±0.79 1.473±0.30 1.318±0.21 2.397±0.80 0.194±0.11 1.862±0.16 0.287±0.11 2.820±1.28 0.284±0.23 0.274±0.12
ENSMUSG00000054321 ENSMUST00000169862 1.247±0.56 3.256±0.59 0.482±0.25 0.215±0.10 1.853±0.92 1.304±0.17 0.360±0.14 0.579±0.39 0.376±0.16 1.560±0.33 0.275±0.08 4.569±2.80 1.045±0.39 2.585±1.05
ENSMUSG00000071867 ENSMUST00000096579 0.102±0.00 0.172±0.00 0.563±0.51 1.159±0.88 0.314±0.04 0.215±0.08 0.173±0.07 0.165±0.09 0.619±0.44 0.114±0.00 N/A 0.204±0.00 N/A 0.133±0.00

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