Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000054321	Taf4b	10090	+	18:14783245-14900359	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000169862		Taf4b-201	14783245-14900359	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000169862	1.247±0.56	3.256±0.59	0.482±0.25	0.215±0.10	1.853±0.92	1.304±0.17	0.360±0.14	0.579±0.39	0.376±0.16	1.560±0.33	0.275±0.08	4.569±2.80	1.045±0.39	2.585±1.05

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0007LU	CIL_0007LU_0002	UCNEbase	18:13186157-15176263
CIL_0000QZ	CIL_0000QZ_0002	CGP	18:14706151-14900359
CIL_0006ER	CIL_0006ER_0002	CGP	18:14783245-15151446

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003677	IEA	DNA binding
GO:0003700	IEA	sequence-specific DNA binding transcription factor activity
GO:0005634	IEA	nucleus
GO:0005667	TAS	transcription factor complex
GO:0005669	IEA	transcription factor TFIID complex
GO:0005730	IEA	nucleolus
GO:0006352	IEA	DNA-templated transcription, initiation
GO:0006357	TAS	regulation of transcription from RNA polymerase II promoter
GO:0006366	TAS	transcription from RNA polymerase II promoter
GO:0046982	IEA	protein heterodimerization activity
GO:0051059	IEA	NF-kappaB binding

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000075732	taf4b	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein_coding	Danio_rerio
ENSG00000141384	TAF4B	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	protein_coding	Homo_sapiens

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