C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulation of nuclear pre-mRNA domain containing 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141425 RPRD1A 9606 - 18:35984387-36067576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357384 RPRD1A-004 35989886-36067556 protein_coding
  ENST00000399022 RPRD1A-001 35989824-36067576 protein_coding
  ENST00000585879 RPRD1A-011 35984389-35993163 nonsense_mediated_decay
  ENST00000585953 RPRD1A-009 36024889-36030850 protein_coding
  ENST00000587563 RPRD1A-010 35984387-35993300 nonsense_mediated_decay
  ENST00000588459 RPRD1A-008 36052875-36064424 processed_transcript
  ENST00000588737 RPRD1A-002 35993040-36067559 protein_coding
  ENST00000589050 RPRD1A-003 36025599-36067557 non_stop_decay
  ENST00000590898 RPRD1A-005 35989824-36067530 protein_coding
  ENST00000591994 RPRD1A-006 36025599-36028190 retained_intron
  ENST00000592674 RPRD1A-007 36033752-36067576 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357384ENST00000399022ENST00000585953ENST00000588737ENST00000589050ENST00000590898ENST00000592674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357384 3.106±0.00 N/A N/A 15.395±0.00 6.423±0.00 9.923±0.00 N/A 4.744±0.00 1.586±0.00 5.856±0.00 2.307±1.11 4.609±1.46 0.996±0.00 9.270±0.00
ENST00000399022 3.926±0.00 4.990±0.00 1.613±0.00 11.666±0.56 3.920±2.96 7.047±3.60 5.622±3.49 2.842±0.70 4.354±1.89 3.614±0.00 3.685±2.54 3.956±1.27 2.583±0.61 8.246±0.00
ENST00000585953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.765±0.73 0.688±0.00 N/A
ENST00000588737 N/A N/A 2.848±0.00 7.702±0.00 N/A N/A 2.142±0.00 N/A N/A 4.504±0.00 N/A 2.979±1.64 1.184±0.00 6.853±0.00
ENST00000589050 N/A N/A 9.033±0.00 21.186±0.00 8.967±0.00 16.236±0.00 8.673±0.00 8.498±0.00 24.788±0.00 12.258±0.00 4.292±0.00 9.409±5.01 1.515±0.00 13.217±0.00
ENST00000590898 N/A 3.903±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592674 N/A N/A N/A N/A N/A N/A N/A 9.801±0.00 N/A N/A 7.815±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W5 CIL_0003W5_0001 CGP 18:35972083-36067576
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060755 RPRD1A regulation of nuclear pre-mRNA domain containing 1A protein_coding Danio_rerio
ENSMUSG00000040446 Rprd1a regulation of nuclear pre-mRNA domain containing 1A protein_coding Mus_musculus

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