C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399022 RPRD1A-001 ENSG00000141425 9606 - 18:35989824-36067576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399022 3.926±0.00 4.990±0.00 1.613±0.00 11.666±0.56 3.920±2.96 7.047±3.60 5.622±3.49 2.842±0.70 4.354±1.89 3.614±0.00 3.685±2.54 3.956±1.27 2.583±0.61 8.246±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W5 CIL_0003W5_0001 CGP 18:35972083-36067576
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046206 Rprd1a-201 protein_coding Mus_musculus 0 1827
ENSDART00000085956 RPRD1A-201 protein_coding Danio_rerio 1e-38 167

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