C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003W5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141428-ENSG00000141425 CGP 9606 18:35972083-36067576
GeneTranscriptPositionBiotype
ENSG00000141425 (RPRD1A)
regulation of nuclear pre-mRNA domain containing 1A 		ENST00000357384 (RPRD1A-004) 35989886-36067556 protein_coding
ENST00000399022 (RPRD1A-001) 35989824-36067576 protein_coding
ENST00000585879 (RPRD1A-011) 35984389-35993163 nonsense_mediated_decay
ENST00000585953 (RPRD1A-009) 36024889-36030850 protein_coding
ENST00000587563 (RPRD1A-010) 35984387-35993300 nonsense_mediated_decay
ENST00000588459 (RPRD1A-008) 36052875-36064424 processed_transcript
ENST00000588737 (RPRD1A-002) 35993040-36067559 protein_coding
ENST00000589050 (RPRD1A-003) 36025599-36067557 non_stop_decay
ENST00000590898 (RPRD1A-005) 35989824-36067530 protein_coding
ENST00000591994 (RPRD1A-006) 36025599-36028190 retained_intron
ENST00000592674 (RPRD1A-007) 36033752-36067576 nonsense_mediated_decay
ENSG00000141428 (C18orf21)
chromosome 18 open reading frame 21 		ENST00000269194 (C18orf21-004) 35972634-35978939 protein_coding
ENST00000333234 (C18orf21-002) 35972785-35979278 protein_coding
ENST00000587719 (C18orf21-003) 35972681-35973340 retained_intron
ENST00000587873 (C18orf21-005) 35972682-35978873 protein_coding
ENST00000592875 (C18orf21-001) 35972083-35979278 protein_coding
ENST00000593210 (C18orf21-006) 35972713-35973648 processed_transcript
ENST00000610527 (C18orf21-201) 35972625-35979286 protein_coding
ENST00000618334 (C18orf21-202) 35972625-35979286 protein_coding
ENSG00000278986 (RP11-723J4.3)
 ENST00000623524 (RP11-723J4.3-001) 35972151-35973916 TEC
CIL_0003W5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024273-ENSMUSG00000040446 CGP 10090 18:24470861-24530204
GeneTranscriptPositionBiotype
ENSMUSG00000024273 (2700062C07Rik)
RIKEN cDNA 2700062C07 gene 		ENSMUST00000097646 (2700062C07Rik-201) 24470861-24477765 protein_coding
ENSMUSG00000040446 (Rprd1a)
regulation of nuclear pre-mRNA domain containing 1A 		ENSMUST00000046206 (Rprd1a-201) 24484962-24530204 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003W5_0001ENSG00000141425ENST00000357384ENST00000399022ENST00000585879ENST00000585953ENST00000587563ENST00000588459ENST00000588737ENST00000589050ENST00000590898ENST00000591994ENST00000592674ENSG00000141428ENST00000269194ENST00000333234ENST00000587719ENST00000587873ENST00000592875ENST00000593210ENST00000610527ENST00000618334ENSG00000278986ENST00000623524CIL_0003W5_0002ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000040446ENSMUST00000046206
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003W5_0001ENSG00000141425ENST00000357384ENST00000399022ENST00000585953ENST00000588737ENST00000589050ENST00000590898ENST00000592674ENSG00000141428ENST00000269194ENST00000333234ENST00000587873ENST00000592875ENST00000610527ENST00000618334ENSG00000278986ENST00000623524CIL_0003W5_0002ENSMUSG00000024273ENSMUST00000097646ENSMUSG00000040446ENSMUST00000046206
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141425 ENST00000357384 3.106±0.00 N/A N/A 15.395±0.00 6.423±0.00 9.923±0.00 N/A 4.744±0.00 1.586±0.00 5.856±0.00 2.307±1.11 4.609±1.46 0.996±0.00 9.270±0.00
ENST00000399022 3.926±0.00 4.990±0.00 1.613±0.00 11.666±0.56 3.920±2.96 7.047±3.60 5.622±3.49 2.842±0.70 4.354±1.89 3.614±0.00 3.685±2.54 3.956±1.27 2.583±0.61 8.246±0.00
ENST00000585879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.765±0.73 0.688±0.00 N/A
ENST00000587563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588737 N/A N/A 2.848±0.00 7.702±0.00 N/A N/A 2.142±0.00 N/A N/A 4.504±0.00 N/A 2.979±1.64 1.184±0.00 6.853±0.00
ENST00000589050 N/A N/A 9.033±0.00 21.186±0.00 8.967±0.00 16.236±0.00 8.673±0.00 8.498±0.00 24.788±0.00 12.258±0.00 4.292±0.00 9.409±5.01 1.515±0.00 13.217±0.00
ENST00000590898 N/A 3.903±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592674 N/A N/A N/A N/A N/A N/A N/A 9.801±0.00 N/A N/A 7.815±0.00 N/A N/A N/A
ENSG00000141428 ENST00000269194 1.307±0.00 5.578±0.00 N/A 3.096±0.00 2.448±0.00 N/A 4.084±0.00 4.814±0.00 3.911±0.00 3.529±0.00 9.573±0.00 3.588±1.35 6.228±0.00 18.506±2.86
ENST00000333234 N/A 4.132±0.00 0.488±0.00 1.802±0.54 1.427±0.28 1.874±0.00 1.042±0.56 2.131±0.00 0.655±0.11 0.450±0.00 N/A 2.576±2.23 2.572±0.81 3.073±0.00
ENST00000587719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587873 2.393±0.00 N/A N/A N/A N/A 3.189±0.00 N/A N/A 0.504±0.00 N/A 0.632±0.00 N/A N/A N/A
ENST00000592875 N/A N/A N/A N/A N/A 0.649±0.00 0.468±0.00 0.783±0.00 0.150±0.00 0.251±0.00 1.184±0.00 1.141±0.15 1.552±0.20 N/A
ENST00000593210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610527 1.336±0.00 N/A N/A 2.000±0.00 1.572±0.00 1.752±0.00 N/A N/A 0.273±0.00 N/A N/A 2.709±0.00 N/A 6.516±0.00
ENST00000618334 0.779±0.00 N/A N/A N/A 1.361±0.32 1.305±0.00 0.673±0.00 1.327±0.00 1.455±0.00 1.567±0.24 4.841±0.00 N/A N/A 3.895±0.00
ENSG00000278986 ENST00000623524 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 0.166±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024273 ENSMUST00000097646 6.989±0.87 5.034±1.17 10.066±0.05 9.211±2.47 4.016±1.00 3.858±0.78 1.693±0.32 5.088±1.84 5.169±3.02 4.168±0.74 1.304±0.37 7.837±1.96 11.563±2.99 6.800±3.35
ENSMUSG00000040446 ENSMUST00000046206 4.307±1.61 5.428±1.53 7.014±3.09 10.792±2.57 4.264±2.02 3.661±0.89 6.355±3.16 4.599±1.02 3.018±0.63 5.957±1.07 5.538±1.33 10.126±3.20 2.583±0.62 3.552±1.00

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