C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589050 RPRD1A-003 ENSG00000141425 9606 - 18:36025599-36067557 non_stop_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000589050
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000589050 9.033±0.00 21.186±0.00 8.967±0.00 16.236±0.00 8.673±0.00 8.498±0.00 24.788±0.00 12.258±0.00 4.292±0.00 9.409±5.01 1.515±0.00 13.217±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W5 CIL_0003W5_0001 CGP 18:35972083-36067576
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046206 Rprd1a-201 protein_coding Mus_musculus 0 1203
ENSDART00000085956 RPRD1A-201 protein_coding Danio_rerio 2e-39 167

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