C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulation of nuclear pre-mRNA domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357384 RPRD1A-004 ENSG00000141425 9606 - 18:35989886-36067556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357384
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357384 3.106±0.00 15.395±0.00 6.423±0.00 9.923±0.00 4.744±0.00 1.586±0.00 5.856±0.00 2.307±1.11 4.609±1.46 0.996±0.00 9.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W5 CIL_0003W5_0001 CGP 18:35972083-36067576
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0070940 IMP dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046206 Rprd1a-201 protein_coding Mus_musculus 0 1450
ENSDART00000085956 RPRD1A-201 protein_coding Danio_rerio 4e-39 167

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