C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142534 RPS11 9606 + 19:49496365-49499689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270625 RPS11-001 49496374-49499689 protein_coding
  ENST00000594493 RPS11-003 49496434-49499689 protein_coding
  ENST00000596873 RPS11-006 49496432-49498251 protein_coding
  ENST00000599167 RPS11-004 49496370-49499689 retained_intron
  ENST00000599561 RPS11-008 49496454-49499689 protein_coding
  ENST00000600027 RPS11-005 49496365-49499689 retained_intron
  ENST00000601216 RPS11-007 49496436-49498080 retained_intron
  ENST00000601306 RPS11-009 49496466-49499688 nonsense_mediated_decay
  ENST00000602252 RPS11-002 49496431-49499689 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270625ENST00000596873ENST00000599561ENST00000601306
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270625 1264.940±0.00 1300.370±0.00 51.405±0.00 510.713±393.09 579.314±349.56 1436.136±1194.80 265.175±197.72 424.895±231.83 305.301±73.31 818.347±659.54 444.510±279.07 2055.827±2206.47 649.844±383.69 1164.688±722.67
ENST00000596873 N/A N/A 33.104±0.00 139.099±0.00 91.646±0.00 83.488±0.00 45.974±0.00 84.371±0.00 129.573±0.00 98.720±0.00 130.385±0.00 197.531±0.00 N/A N/A
ENST00000599561 1879.820±0.00 2865.570±0.00 N/A N/A 2050.030±0.00 893.922±0.00 N/A 171.759±0.00 N/A N/A N/A N/A N/A 734.305±0.00
ENST00000601306 N/A N/A N/A N/A N/A N/A 14.542±0.00 118.887±0.00 347.500±0.00 994.816±0.00 352.858±269.68 4089.020±0.00 2361.945±635.68 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001649 IEA osteoblast differentiation
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053058 rps11 ribosomal protein S11 protein_coding Danio_rerio
ENSDARG00000093606 RPS11 (2 of 2) ribosomal protein S11 protein_coding Danio_rerio
ENSMUSG00000003429 Rps11 ribosomal protein S11 protein_coding Mus_musculus

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