C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000270625 RPS11-001 ENSG00000142534 9606 + 19:49496374-49499689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270625 1264.940±0.00 1300.370±0.00 51.405±0.00 510.713±393.09 579.314±349.56 1436.136±1194.80 265.175±197.72 424.895±231.83 305.301±73.31 818.347±659.54 444.510±279.07 2055.827±2206.47 649.844±383.69 1164.688±722.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001649 IEA osteoblast differentiation
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003521 Rps11-201 protein_coding Mus_musculus 0 654
ENSMUST00000121547 Rps11-ps2-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000062226 Rps11-ps4-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117608 Rps11-ps3-001 processed_pseudogene Mus_musculus 0 468
ENSDART00000075028 rps11-001 protein_coding Danio_rerio 0 414
ENSDART00000134524 rps11-002 processed_transcript Danio_rerio 0 388
ENSMUST00000117302 Rps11-ps5-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000138868 Ccdc174-003 retained_intron Mus_musculus 0 231

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