C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367387 LHX9-004 ENSG00000143355 9606 + 1:197917399-197935476 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMuscleOvaryTestisENST00000367387
Transcript ID Heart Lung Muscle Ovary Testis
ENST00000367387 0.012±0.00 0.076±0.00 0.006±0.00 0.405±0.26 0.626±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0001 UCNEbase 1:197596839-198391876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008045 ISS motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0008283 IEA cell proliferation
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0035262 IEA gonad morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112026 Lhx9-005 protein_coding Mus_musculus 0 2285
ENSMUST00000046870 Lhx9-001 protein_coding Mus_musculus 0 2065
ENSMUST00000019374 Lhx9-002 protein_coding Mus_musculus 0 1555
ENSMUST00000093486 Lhx9-201 protein_coding Mus_musculus 0 1336
ENSMUST00000112030 Lhx9-004 protein_coding Mus_musculus 0 1336
ENSDART00000054807 lhx9-001 protein_coding Danio_rerio 0 976
ENSMUST00000000253 Lhx2-001 protein_coding Mus_musculus 0 303
ENSMUST00000133661 Lhx2-005 protein_coding Mus_musculus 0 303
ENSMUST00000143783 Lhx2-003 protein_coding Mus_musculus 0 303
ENSMUST00000176229 Lhx2-007 nonsense_mediated_decay Mus_musculus 0 298
ENSMUST00000175896 Lhx2-006 retained_intron Mus_musculus 3.00004e-41 176
ENSDART00000079556 lhx9-201 protein_coding Danio_rerio 2e-27 130

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