C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 9kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143742 SRP9 9606 + 1:225777813-225790466 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304786 SRP9-001 225777829-225790466 protein_coding
  ENST00000366838 SRP9-003 225777935-225789524 protein_coding
  ENST00000366839 SRP9-002 225777837-225790466 protein_coding
  ENST00000619790 SRP9-201 225777813-225786969 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304786ENST00000366839ENST00000619790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304786 30.017±0.00 31.774±0.00 14.435±0.00 48.510±3.58 35.205±3.32 37.513±8.08 30.839±13.36 50.044±19.35 33.898±11.74 26.969±5.41 17.705±11.12 46.343±8.11 32.171±5.59 33.458±14.31
ENST00000366839 5.918±0.00 9.701±0.00 N/A 15.089±9.57 N/A 5.958±0.00 N/A 7.076±2.00 4.117±0.00 8.813±5.53 1.561±0.00 13.785±5.57 6.605±2.18 8.079±1.05
ENST00000619790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.882±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183
CIL_0000BU CIL_0000BU_0002 CGP 1:225486835-225790466
CIL_0000BT CIL_0000BT_0002 CGP 1:225777813-225845563

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005047 TAS signal recognition particle binding
GO:0005785 TAS signal recognition particle receptor complex
GO:0005786 NAS signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0044267 TAS cellular protein metabolic process
GO:0045900 IEA negative regulation of translational elongation
GO:0048500 IEA signal recognition particle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042851 srp9 signal recognition particle 9 protein_coding Danio_rerio
ENSMUSG00000026511 Srp9 signal recognition particle 9 protein_coding Mus_musculus

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