C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 9kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366839 SRP9-002 ENSG00000143742 9606 + 1:225777837-225790466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366839
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366839 5.918±0.00 9.701±0.00 15.089±9.57 5.958±0.00 7.076±2.00 4.117±0.00 8.813±5.53 1.561±0.00 13.785±5.57 6.605±2.18 8.079±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183
CIL_0000BU CIL_0000BU_0002 CGP 1:225486835-225790466
CIL_0000BT CIL_0000BT_0002 CGP 1:225777813-225845563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005047 TAS signal recognition particle binding
GO:0005785 TAS signal recognition particle receptor complex
GO:0005786 NAS signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0044267 TAS cellular protein metabolic process
GO:0045900 IEA negative regulation of translational elongation
GO:0048500 IEA signal recognition particle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111018 Srp9-002 protein_coding Mus_musculus 0 195
ENSMUST00000027792 Srp9-001 protein_coding Mus_musculus 0 191
ENSMUST00000119272 Gm13736-001 processed_pseudogene Mus_musculus 3e-35 154

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