C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 9kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304786 SRP9-001 ENSG00000143742 9606 + 1:225777829-225790466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304786 30.017±0.00 31.774±0.00 14.435±0.00 48.510±3.58 35.205±3.32 37.513±8.08 30.839±13.36 50.044±19.35 33.898±11.74 26.969±5.41 17.705±11.12 46.343±8.11 32.171±5.59 33.458±14.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183
CIL_0000BU CIL_0000BU_0002 CGP 1:225486835-225790466
CIL_0000BT CIL_0000BT_0002 CGP 1:225777813-225845563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005047 TAS signal recognition particle binding
GO:0005785 TAS signal recognition particle receptor complex
GO:0005786 NAS signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0044267 TAS cellular protein metabolic process
GO:0045900 IEA negative regulation of translational elongation
GO:0048500 IEA signal recognition particle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027792 Srp9-001 protein_coding Mus_musculus 0 363
ENSMUST00000119272 Gm13736-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000111018 Srp9-002 protein_coding Mus_musculus 0 191

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