C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144218 AFF3 9606 - 2:99545419-100142739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317233 AFF3-201 99547256-100142575 protein_coding
  ENST00000409236 AFF3-001 99545419-100104716 protein_coding
  ENST00000409579 AFF3-002 99551121-100106128 protein_coding
  ENST00000415384 AFF3-009 100008899-100106047 protein_coding
  ENST00000416492 AFF3-005 100007337-100142583 protein_coding
  ENST00000423966 AFF3-003 100007169-100142575 protein_coding
  ENST00000424600 AFF3-006 100007293-100105339 protein_coding
  ENST00000427118 AFF3-010 100104402-100106047 protein_coding
  ENST00000430789 AFF3-012 99630578-100006845 nonsense_mediated_decay
  ENST00000432037 AFF3-014 100007152-100104530 protein_coding
  ENST00000440445 AFF3-008 100007399-100105807 protein_coding
  ENST00000441400 AFF3-007 100007249-100105427 protein_coding
  ENST00000445815 AFF3-015 99554393-99578370 protein_coding
  ENST00000483600 AFF3-011 100109845-100142739 processed_transcript
  ENST00000498090 AFF3-013 100006149-100007951 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317233ENST00000409236ENST00000409579ENST00000423966ENST00000424600ENST00000432037ENST00000441400ENST00000498090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317233 0.606±0.00 2.633±0.00 0.420±0.00 3.717±0.39 1.454±0.65 1.438±0.87 0.396±0.30 0.539±0.05 1.752±1.58 1.610±0.32 0.186±0.03 0.810±0.96 1.217±0.01 2.511±0.14
ENST00000409236 0.149±0.00 N/A N/A 0.590±0.00 N/A 0.372±0.22 0.085±0.00 N/A 0.096±0.00 N/A N/A 0.153±0.13 N/A 0.579±0.15
ENST00000409579 N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A N/A
ENST00000424600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.685±0.00 N/A N/A N/A
ENST00000432037 N/A N/A N/A N/A N/A N/A 1.039±0.00 N/A N/A 15.383±0.00 N/A N/A N/A N/A
ENST00000441400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.977±0.71 N/A N/A
ENST00000498090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000346 CIL_000346_0001 CGP 2:99400475-100142739
CIL_0007N7 CIL_0007N7_0002 UCNEbase 2:99405215-99899588
CIL_0004HL CIL_0004HL_0001 CGP 2:99545419-100322733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003690 IDA double-stranded DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0034612 IMP response to tumor necrosis factor
GO:0035116 IMP embryonic hindlimb morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079575 aff3 AF4/FMR2 family, member 3 protein_coding Danio_rerio
ENSMUSG00000037138 Aff3 AF4/FMR2 family, member 3 protein_coding Mus_musculus

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