C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037138 Aff3 10090 - 1:38177326-38664955 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027250 Aff3-001 38335431-38664955 protein_coding
  ENSMUST00000039827 Aff3-201 38177327-38664955 protein_coding
  ENSMUST00000095027 Aff3-002 38177326-38627185 protein_coding
  ENSMUST00000134963 Aff3-004 38535159-38664955 nonsense_mediated_decay
  ENSMUST00000136641 Aff3-005 38181262-38197443 protein_coding
  ENSMUST00000142875 Aff3-003 38179243-38627201 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027250ENSMUST00000039827ENSMUST00000095027ENSMUST00000136641ENSMUST00000142875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027250 N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSMUST00000039827 N/A 0.305±0.00 0.367±0.00 2.661±0.00 1.592±0.90 0.367±0.08 N/A N/A 0.086±0.00 1.221±0.24 N/A 2.778±0.85 0.140±0.06 0.206±0.01
ENSMUST00000095027 1.081±0.53 N/A 0.589±0.17 11.809±3.66 2.774±1.97 0.180±0.00 0.443±0.12 0.369±0.23 0.139±0.08 4.998±2.17 0.204±0.18 6.743±2.67 0.282±0.24 0.748±0.34
ENSMUST00000136641 N/A 1.625±0.19 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 2.077±0.68
ENSMUST00000142875 N/A N/A N/A N/A 2.056±0.23 0.345±0.08 N/A N/A 0.075±0.00 2.243±0.00 0.067±0.00 4.321±0.00 N/A 0.455±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N7 CIL_0007N7_0003 UCNEbase 1:38052781-38449781
CIL_000346 CIL_000346_0002 CGP 1:38052787-38664955
CIL_0004HL CIL_0004HL_0002 CGP 1:38177326-38836090

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0034612 IEA response to tumor necrosis factor
GO:0035116 IEA embryonic hindlimb morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079575 aff3 AF4/FMR2 family, member 3 protein_coding Danio_rerio
ENSG00000144218 AFF3 AF4/FMR2 family, member 3 protein_coding Homo_sapiens

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